Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   LAE75_RS06625 Genome accession   NZ_CP083378
Coordinates   1226823..1228004 (+) Length   393 a.a.
NCBI ID   WP_002787827.1    Uniprot ID   -
Organism   Campylobacter coli strain C203112     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1221823..1233004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS06610 (LAE75_06555) cysC 1222495..1223079 (+) 585 WP_052778835.1 adenylyl-sulfate kinase -
  LAE75_RS06615 (LAE75_06560) - 1223076..1224767 (+) 1692 WP_224027356.1 hypothetical protein -
  LAE75_RS06620 (LAE75_06565) - 1224799..1226826 (+) 2028 WP_224027357.1 capsular polysaccharide biosynthesis protein -
  LAE75_RS06625 (LAE75_06570) kpsS 1226823..1228004 (+) 1182 WP_002787827.1 capsule biosynthesis protein Regulator
  LAE75_RS06630 (LAE75_06575) - 1228073..1229194 (+) 1122 WP_224027358.1 DUF829 domain-containing protein -
  LAE75_RS06635 (LAE75_06580) - 1229191..1230561 (+) 1371 WP_157141756.1 cytochrome P450 -
  LAE75_RS06640 (LAE75_06585) - 1230558..1230980 (+) 423 WP_002783824.1 hypothetical protein -
  LAE75_RS06645 (LAE75_06590) acpS 1230983..1231330 (-) 348 WP_002779165.1 holo-ACP synthase -
  LAE75_RS06650 (LAE75_06595) fliL 1231330..1231866 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 46439.14 Da        Isoelectric Point: 9.9585

>NTDB_id=605500 LAE75_RS06625 WP_002787827.1 1226823..1228004(+) (kpsS) [Campylobacter coli strain C203112]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSTFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKYH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINELSQKYHVEGRIFYVHDTYLPTLLKNALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFLG

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=605500 LAE75_RS06625 WP_002787827.1 1226823..1228004(+) (kpsS) [Campylobacter coli strain C203112]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGTGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTACTTTTCTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGTACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTCTATGTACATGATACTTATTTGCCTACTCTTTTAAAAAATGCTTTAGGTTGTATTACGATCAATTCT
ACAGTAGGTTTAAGTGCTATTTTAGAGGGTTGTCCTACTAAGGTTTGTGGAAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCAAAAAAACTTCAATTTTTTTGGCGCGAAGCTCATGCTTATAAACCCAATCCTAGCTTGGTTATAAATTTTAAAA
ATTATCTTTTAAATACAAATCAGTTCAATGGCAATTTTTACAAAAATTCGTTTTTAGGTTGA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.5

99.746

0.873