Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   LAE75_RS05155 Genome accession   NZ_CP083378
Coordinates   939120..940079 (-) Length   319 a.a.
NCBI ID   WP_212145321.1    Uniprot ID   -
Organism   Campylobacter coli strain C203112     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 934120..945079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAE75_RS05125 (LAE75_05070) - 935085..935285 (+) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  LAE75_RS05130 (LAE75_05075) - 935315..935614 (-) 300 WP_002777238.1 cytochrome c -
  LAE75_RS05135 (LAE75_05080) - 935691..936254 (+) 564 WP_002787747.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  LAE75_RS05140 (LAE75_05085) rfaD 936251..937204 (+) 954 WP_004283871.1 ADP-glyceromanno-heptose 6-epimerase -
  LAE75_RS05145 (LAE75_05090) rfaE1 937197..938582 (+) 1386 WP_224027328.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  LAE75_RS05150 (LAE75_05095) gmhA 938579..939139 (+) 561 WP_052783332.1 D-sedoheptulose 7-phosphate isomerase -
  LAE75_RS05155 (LAE75_05100) waaF 939120..940079 (-) 960 WP_212145321.1 lipopolysaccharide heptosyltransferase II Regulator
  LAE75_RS05160 (LAE75_05105) - 940138..940956 (+) 819 WP_002780620.1 glycosyltransferase family 2 protein -
  LAE75_RS05165 (LAE75_05110) - 941052..942095 (+) 1044 WP_168207695.1 polysaccharide pyruvyl transferase family protein -
  LAE75_RS05170 (LAE75_05115) - 942581..942925 (+) 345 WP_212145403.1 hypothetical protein -
  LAE75_RS09030 (LAE75_05120) - 942935..943123 (+) 189 WP_032682936.1 sulfatase-like hydrolase/transferase -
  LAE75_RS05175 (LAE75_05125) - 943128..943904 (+) 777 WP_050456352.1 sulfatase-like hydrolase/transferase -
  LAE75_RS05180 (LAE75_05130) - 944001..944273 (+) 273 WP_002780626.1 hypothetical protein -
  LAE75_RS09035 - 944459..944590 (+) 132 WP_004283885.1 hypothetical protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36700.21 Da        Isoelectric Point: 10.2941

>NTDB_id=605495 LAE75_RS05155 WP_212145321.1 939120..940079(-) (waaF) [Campylobacter coli strain C203112]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGINPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=605495 LAE75_RS05155 WP_212145321.1 939120..940079(-) (waaF) [Campylobacter coli strain C203112]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGAATCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

93.73

100

0.937