Detailed information NTG0605474

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: LAE76_RS05940
• Genome accession: NZ_CP083377
• Coordinates: 1120542..1121501 (-)
• Length: 319 a.a.
• NCBI ID: WP_032685565.1
• Uniprot ID: -
• Organism: Campylobacter coli strain C203110
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1115542..1126501

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LAE76_RS05910 (LAE76_05875)	-	1116507..1116707 (+)	201	WP_002777240.1	cbb3-type cytochrome oxidase assembly protein	-
LAE76_RS05915 (LAE76_05880)	-	1116737..1117036 (-)	300	WP_002777238.1	cytochrome c	-
LAE76_RS05920 (LAE76_05885)	-	1117113..1117676 (+)	564	WP_002820231.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
LAE76_RS05925 (LAE76_05890)	rfaD	1117673..1118626 (+)	954	WP_038853884.1	ADP-glyceromanno-heptose 6-epimerase	-
LAE76_RS05930 (LAE76_05895)	rfaE1	1118619..1120004 (+)	1386	WP_002831599.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
LAE76_RS05935 (LAE76_05900)	gmhA	1120001..1120561 (+)	561	WP_052783332.1	D-sedoheptulose 7-phosphate isomerase	-
LAE76_RS05940 (LAE76_05905)	waaF	1120542..1121501 (-)	960	WP_032685565.1	lipopolysaccharide heptosyltransferase II	Regulator
LAE76_RS05945 (LAE76_05910)	-	1121560..1122378 (+)	819	WP_002780620.1	glycosyltransferase family 2 protein	-
LAE76_RS05950 (LAE76_05915)	-	1122474..1123505 (+)	1032	WP_224027311.1	polysaccharide pyruvyl transferase family protein	-
LAE76_RS05955 (LAE76_05920)	-	1123991..1124335 (+)	345	WP_002780624.1	hypothetical protein	-
LAE76_RS09110 (LAE76_05925)	-	1124345..1124533 (+)	189	WP_032682936.1	sulfatase-like hydrolase/transferase	-
LAE76_RS05960 (LAE76_05930)	-	1124538..1125314 (+)	777	WP_050456352.1	sulfatase-like hydrolase/transferase	-
LAE76_RS05965 (LAE76_05935)	-	1125411..1125683 (+)	273	WP_002780626.1	hypothetical protein	-
LAE76_RS09115	-	1125869..1126000 (+)	132	WP_004283885.1	hypothetical protein	-

Sequence

Protein

• Length: 319 a.a.
• Molecular weight: 36723.20 Da
• Isoelectric Point: 10.3041

>NTDB_id=605474 LAE76_RS05940 WP_032685565.1 1120542..1121501(-) (waaF) [Campylobacter coli strain C203110]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKTIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL

Nucleotide

• Length: 960 bp

>NTDB_id=605474 LAE76_RS05940 WP_032685565.1 1120542..1121501(-) (waaF) [Campylobacter coli strain C203110]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAACCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (94-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	94.357	100	0.944