Detailed information NTG0060547

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HK86_RS14805
• Genome accession: NC_021847
• Coordinates: 3162324..3163310 (-)
• Length: 328 a.a.
• NCBI ID: WP_041170661.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:Kuk str. FDA_R31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3157324..3168310

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK86_RS14790 (M634_15175)	recA	3157873..3158916 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
HK86_RS14795 (M634_15180)	pncC	3159117..3159599 (-)	483	WP_020841267.1	nicotinamide-nucleotide amidase	-
HK86_RS14800 (M634_15185)	mutS	3159684..3162245 (+)	2562	WP_020841268.1	DNA mismatch repair protein MutS	-
HK86_RS14805 (M634_15190)	rpoS	3162324..3163310 (-)	987	WP_041170661.1	RNA polymerase sigma factor RpoS	Regulator
HK86_RS14810 (M634_15195)	-	3163388..3164311 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
HK86_RS14815 (M634_15200)	-	3164326..3164952 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HK86_RS14820 (M634_15205)	surE	3164952..3165728 (-)	777	WP_020841269.1	5'/3'-nucleotidase SurE	-
HK86_RS14825 (M634_15210)	truD	3165728..3166771 (-)	1044	WP_020841270.1	tRNA pseudouridine(13) synthase TruD	-
HK86_RS14830 (M634_15215)	ispF	3166818..3167294 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HK86_RS14835 (M634_15220)	ispD	3167312..3168016 (-)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HK86_RS14840 (M634_15225)	ftsB	3168018..3168299 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37395.28 Da
• Isoelectric Point: 4.6433

>NTDB_id=60547 HK86_RS14805 WP_041170661.1 3162324..3163310(-) (rpoS) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MSISNTVTKVEEFEFDNVSETTVDNELTKPSSTEGKAAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=60547 HK86_RS14805 WP_041170661.1 3162324..3163310(-) (rpoS) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGAATTTGACAATGTGTCAGAGACGACCGTTGATAACGAACT
CACAAAACCATCATCTACAGAAGGTAAGGCCGCTGCGCGCGAAGAGTTTGATGCTAGCAGCAAGAGCTTAGATGCAACAC
AATTGTATCTGGGTGAAATAGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTCCTTTATGCCCGCAGAGCGTTGCGT
GGTGATGAAGCGGCTCGTAAGCGTATGATCGAAAGCAATCTACGTTTGGTGGTGAAAATTTCTCGTCGATACAGCAATCG
CGGTCTTGCACTACTTGATCTTATAGAAGAGGGTAACCTCGGGTTGATCCGCGCGGTTGAAAAATTCGATCCAGAACGAG
GTTTCCGTTTCTCAACTTACGCCACATGGTGGATCCGTCAAACGATCGAACGTGCGCTGATGAATCAAACTCGTACTATT
CGTTTGCCTATTCATGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCATGA
GCCAACGGCAGAAGAAATTGCGGCTCAATTAGATATCCCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGCGTA
TTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCTGAT
CCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAAAGA
AGTTCTTGCACGTCGTTTTGGTTTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGGCGAGAGATTGGTCTGACCC
GTGAGCGTGTACGTCAAATCCAAGTAGAGGGTTTACGTCGACTTCGTGAAATTCTAATTAAACAAGGTCTAAACATGGAA
AACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.273	100	0.866