Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   K9N54_RS19590 Genome accession   NZ_CP083362
Coordinates   483010..484107 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 478010..489107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS19575 (K9N54_19455) - 478673..479728 (-) 1056 WP_015313427.1 HlyD family secretion protein -
  K9N54_RS19580 (K9N54_19460) - 479767..480222 (-) 456 WP_005477342.1 MarR family transcriptional regulator -
  K9N54_RS19585 (K9N54_19465) luxQ 480434..483010 (-) 2577 WP_140137138.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  K9N54_RS19590 (K9N54_19470) luxP 483010..484107 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  K9N54_RS19595 (K9N54_19475) - 484459..484779 (-) 321 WP_023623674.1 GIY-YIG nuclease family protein -
  K9N54_RS19600 (K9N54_19480) - 484776..485426 (-) 651 WP_017447360.1 YceH family protein -
  K9N54_RS19605 (K9N54_19485) - 485603..485818 (-) 216 WP_196952926.1 hypothetical protein -
  K9N54_RS19610 (K9N54_19490) - 485825..485980 (-) 156 WP_196952920.1 hypothetical protein -
  K9N54_RS19615 (K9N54_19495) - 486145..486459 (+) 315 WP_005453573.1 DUF496 family protein -
  K9N54_RS19620 (K9N54_19500) - 486582..487919 (+) 1338 WP_025790808.1 MATE family efflux transporter -
  K9N54_RS19625 (K9N54_19505) - 487993..488970 (-) 978 WP_025790806.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=605398 K9N54_RS19590 WP_005463467.1 483010..484107(-) (luxP) [Vibrio parahaemolyticus strain 20-082E4]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=605398 K9N54_RS19590 WP_005463467.1 483010..484107(-) (luxP) [Vibrio parahaemolyticus strain 20-082E4]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCAGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATCAATGGCTGGGGTGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644