Detailed information NTG0605380

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K9N54_RS13970
• Genome accession: NZ_CP083361
• Coordinates: 2906013..2907002 (-)
• Length: 329 a.a.
• NCBI ID: WP_025792827.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 20-082E4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2901013..2912002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K9N54_RS13955 (K9N54_13840)	recA	2901562..2902605 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
K9N54_RS13960 (K9N54_13845)	pncC	2902806..2903288 (-)	483	WP_025554256.1	nicotinamide-nucleotide amidase	-
K9N54_RS13965 (K9N54_13850)	mutS	2903373..2905934 (+)	2562	WP_025792829.1	DNA mismatch repair protein MutS	-
K9N54_RS13970 (K9N54_13855)	rpoS	2906013..2907002 (-)	990	WP_025792827.1	RNA polymerase sigma factor RpoS	Regulator
K9N54_RS13975 (K9N54_13860)	-	2907083..2908006 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
K9N54_RS13980 (K9N54_13865)	-	2908021..2908647 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K9N54_RS13985 (K9N54_13870)	surE	2908647..2909423 (-)	777	WP_025792825.1	5'/3'-nucleotidase SurE	-
K9N54_RS13990 (K9N54_13875)	truD	2909423..2910466 (-)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
K9N54_RS13995 (K9N54_13880)	ispF	2910513..2910989 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K9N54_RS14000 (K9N54_13885)	ispD	2911007..2911711 (-)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K9N54_RS14005 (K9N54_13890)	ftsB	2911713..2911994 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6096

>NTDB_id=605380 K9N54_RS13970 WP_025792827.1 2906013..2907002(-) (rpoS) [Vibrio parahaemolyticus strain 20-082E4]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLVHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=605380 K9N54_RS13970 WP_025792827.1 2906013..2907002(-) (rpoS) [Vibrio parahaemolyticus strain 20-082E4]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTGCTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACTTGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGATGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCCAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGGTCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGGTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851