Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HK86_RS08195 Genome accession   NC_021847
Coordinates   1761471..1762892 (-) Length   473 a.a.
NCBI ID   WP_005454911.1    Uniprot ID   A0A0L8TA80
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1756471..1767892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS08170 (M634_08390) - 1757035..1757685 (+) 651 WP_020840479.1 thiopurine S-methyltransferase -
  HK86_RS08175 (M634_08395) purT 1757787..1758962 (-) 1176 WP_020840480.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  HK86_RS08180 (M634_08400) cdd 1759110..1759997 (-) 888 WP_020840481.1 cytidine deaminase -
  HK86_RS08185 (M634_08405) - 1760362..1761039 (-) 678 WP_020840482.1 LrgB family protein -
  HK86_RS08190 (M634_08410) - 1761041..1761415 (-) 375 WP_020840483.1 CidA/LrgA family protein -
  HK86_RS08195 (M634_08415) sbcB 1761471..1762892 (-) 1422 WP_005454911.1 exodeoxyribonuclease I Machinery gene
  HK86_RS08200 (M634_08420) - 1763048..1764421 (-) 1374 WP_020840484.1 L-cystine transporter -
  HK86_RS08205 (M634_08425) - 1764614..1765309 (-) 696 WP_020840485.1 NAD(P)H-binding protein -
  HK86_RS08210 (M634_08430) cobT 1765993..1767036 (+) 1044 WP_020840486.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HK86_RS08215 (M634_08435) - 1767081..1767833 (+) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54615.95 Da        Isoelectric Point: 4.9813

>NTDB_id=60536 HK86_RS08195 WP_005454911.1 1761471..1762892(-) (sbcB) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=60536 HK86_RS08195 WP_005454911.1 1761471..1762892(-) (sbcB) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGATCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCGCCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATCTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAGCGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8TA80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799

Multiple sequence alignment