Detailed information NTG0605358

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: K9N54_RS01260
• Genome accession: NZ_CP083361
• Coordinates: 265263..266270 (-)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain 20-082E4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 260263..271270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K9N54_RS01225 (K9N54_01230)	-	260441..260872 (-)	432	WP_017633432.1	DUF2787 family protein	-
K9N54_RS01230 (K9N54_01235)	radC	260869..261342 (-)	474	WP_025792561.1	DNA repair protein RadC	-
K9N54_RS01235 (K9N54_01240)	-	261513..261662 (+)	150	WP_005489496.1	AlpA family phage regulatory protein	-
K9N54_RS01240 (K9N54_01245)	-	261822..262046 (+)	225	WP_005489715.1	hypothetical protein	-
K9N54_RS01245 (K9N54_01250)	hslU	262470..263801 (-)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
K9N54_RS01250 (K9N54_01255)	hslV	263825..264376 (-)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
K9N54_RS01255 (K9N54_01260)	ftsN	264541..265086 (-)	546	WP_005481405.1	cell division protein FtsN	-
K9N54_RS01260 (K9N54_01265)	cytR	265263..266270 (-)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
K9N54_RS01265 (K9N54_01270)	priA	266603..268807 (-)	2205	WP_029824531.1	primosomal protein N'	-
K9N54_RS01270 (K9N54_01275)	rpmE	269102..269323 (+)	222	WP_005457203.1	50S ribosomal protein L31	-
K9N54_RS01275 (K9N54_01280)	rpsJ	269781..270092 (+)	312	WP_004410492.1	30S ribosomal protein S10	-
K9N54_RS01280 (K9N54_01285)	rplC	270107..270736 (+)	630	WP_005456132.1	50S ribosomal protein L3	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=605358 K9N54_RS01260 WP_005481416.1 265263..266270(-) (cytR) [Vibrio parahaemolyticus strain 20-082E4]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=605358 K9N54_RS01260 WP_005481416.1 265263..266270(-) (cytR) [Vibrio parahaemolyticus strain 20-082E4]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTGCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904