Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NLY78_RS09395 Genome accession   NZ_CP100435
Coordinates   1911341..1913311 (-) Length   656 a.a.
NCBI ID   WP_012775378.1    Uniprot ID   A0A0H3MYF2
Organism   Streptococcus suis strain DE609B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906341..1918311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY78_RS09360 (NLY78_09355) - 1906392..1906859 (-) 468 WP_012027929.1 hypothetical protein -
  NLY78_RS09365 (NLY78_09360) - 1906846..1907382 (-) 537 WP_012775374.1 hypothetical protein -
  NLY78_RS09370 (NLY78_09365) - 1907490..1908230 (-) 741 WP_012775375.1 metallophosphoesterase -
  NLY78_RS09375 (NLY78_09370) - 1908296..1909645 (-) 1350 WP_012775376.1 glucose-6-phosphate isomerase -
  NLY78_RS09380 (NLY78_09375) - 1909727..1910269 (-) 543 WP_012775377.1 hypothetical protein -
  NLY78_RS09390 (NLY78_09385) tadA 1910540..1911061 (-) 522 WP_012027934.1 tRNA adenosine(34) deaminase TadA -
  NLY78_RS09395 (NLY78_09390) recP/tkt 1911341..1913311 (-) 1971 WP_012775378.1 transketolase Machinery gene
  NLY78_RS09400 (NLY78_09395) ulaG 1913522..1914613 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  NLY78_RS09405 (NLY78_09400) - 1914723..1916411 (-) 1689 WP_012775379.1 transcription antiterminator -
  NLY78_RS09410 (NLY78_09405) - 1916536..1917153 (-) 618 WP_012775380.1 hypothetical protein -
  NLY78_RS09415 (NLY78_09410) - 1917238..1917954 (-) 717 WP_012027938.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70760.63 Da        Isoelectric Point: 4.7816

>NTDB_id=605342 NLY78_RS09395 WP_012775378.1 1911341..1913311(-) (recP/tkt) [Streptococcus suis strain DE609B]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFEE
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=605342 NLY78_RS09395 WP_012775378.1 1911341..1913311(-) (recP/tkt) [Streptococcus suis strain DE609B]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCTGCTCAGCCAAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTGCTTTACGGACTTCTTCACCTTTCAGGTTTTGAAGAA
GTGACTATGGACGAGATTAAAAACTTCCGTCAGTGGGGCTCAAAAACACCAGGTCACCCAGAATTCGGTCACACAGCAGG
TGTGGATGCAACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGTGATGGTTTCCCAATCTTTGACCACTATACTTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTTTCTGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTTG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGACGTAGTTGAAATCAAGCCAGAAGACTTCCCAGTTTATGAGAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCGCTTAACGCAGCGGCTAAGGTCTTGCCAACCTTCCTCGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTACATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATTCAGTTCGGTGTGCGTGAATTTGCCATGGGAACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCTGTGACTT
ATGTCTTCACTCATGACTCTATCGCAGTTGGTGAAGATGGACCAACTCACGAACCAATCGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAACGTTTTCCGTCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGAACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTCAAA
GCTGCCAAAGAATTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
CGCAGCTTACAAGGAAGAAATCCTTCCAAATGCCATCCGTCGTCGTTTGGCAATTGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATGTCGGTCTTGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCAGCTCCAGCCCAAACAGTTATTGAC
AACTACGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MYF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.098

100

0.811