Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K7G89_RS04425 Genome accession   NZ_CP083262
Coordinates   948362..950779 (-) Length   805 a.a.
NCBI ID   WP_223668313.1    Uniprot ID   -
Organism   Pasteurella canis strain HL268     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 943362..955779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G89_RS04405 (K7G89_000877) kdsB 944588..945367 (-) 780 WP_223668309.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K7G89_RS04410 (K7G89_000878) - 945369..945551 (-) 183 WP_223668310.1 Trm112 family protein -
  K7G89_RS04415 (K7G89_000879) lpxK 945578..946543 (-) 966 WP_223668311.1 tetraacyldisaccharide 4'-kinase -
  K7G89_RS04420 (K7G89_000880) msbA 946571..948319 (-) 1749 WP_223668312.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K7G89_RS04425 (K7G89_000881) rec2 948362..950779 (-) 2418 WP_223668313.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K7G89_RS04430 (K7G89_000882) dksA 951075..951512 (+) 438 WP_101775963.1 RNA polymerase-binding protein DksA -
  K7G89_RS04435 (K7G89_000883) pcnB 951601..953103 (+) 1503 WP_223668314.1 polynucleotide adenylyltransferase PcnB -
  K7G89_RS04440 (K7G89_000884) folK 953124..953609 (+) 486 WP_223668315.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K7G89_RS04445 (K7G89_000885) - 953659..954744 (-) 1086 WP_115322550.1 homoserine O-acetyltransferase -
  K7G89_RS04450 (K7G89_000886) - 954894..955607 (+) 714 WP_223668316.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 805 a.a.        Molecular weight: 92364.75 Da        Isoelectric Point: 9.8265

>NTDB_id=605185 K7G89_RS04425 WP_223668313.1 948362..950779(-) (rec2) [Pasteurella canis strain HL268]
MRLSIEQMSACILFSAVSLLWLPDFLLLTWQMTVVACLILLILLFVCYVSGKRQYTRFLILILCLLFNLGYMHAPAHQLL
SQADKVILLPKKVKIDFKIIEILHQTDYQTFIVSAQLQKGEAEQRIYLQWRTKEKVQLGDVWHGELSLKPISSRLNFSGF
DKQQWYLANRITARASVKSAVKLTQHFSWREQLLKESLKQTEGLDYQGLLIALAFGERAWLPQQIWQIYQKTNTAHLIAI
SGLHIGLAMSIGYWIVRCVQILLPLRWIIPHLPMLSGLLLAYIYGQLAGFAIPTSRACIALFVIISCRLLRVSYNAWQLL
LIVTAILLLFDPLMILSLSFWLSISAVTCLVLWYQVFPFSLLQWQGKSISISPWHKVEWIIRIFHLQIGLLWLFTPIQLL
LFNGFSLSSFYANLIALPIYSLVLVPLVLFATFTQGVFSSWSIANEIAQKVTLILQTWQDNWHFVSQTETAFIIIVLTVL
FIIAVRFVYDVKKVDKTRRNLYCLNKPYFGFHFTAEPTLFCSLKRSIYCIATLIVTSCLGYPIYQSFFASEWRLDMLDVG
QGLAVLITKNGRGILYDTGSAWRSGSMAQLEIVPYLQRQGISLEHVIISHDDNDHAGGTKTILQQYPKTTLTTASRQHYG
KTDRTFCLSGQKWYWQGLNIIVLSPHHIVTRAKNMDSCVLLISDGYNNVLLTGDADVASENQFVSQLDKIDVLQVGHHGS
KTSTGYALLQKTRPKIALISSGRWNQWKFPHKQVIQRLTQYQCQIYNTAETGQISLLFNKKQITIQRARTEFSPWYRRLI
GLQKK

Nucleotide


Download         Length: 2418 bp        

>NTDB_id=605185 K7G89_RS04425 WP_223668313.1 948362..950779(-) (rec2) [Pasteurella canis strain HL268]
ATGCGATTATCTATTGAACAAATGTCAGCTTGTATTTTATTCAGCGCAGTTTCATTACTTTGGTTACCTGATTTTTTATT
GCTCACTTGGCAGATGACAGTAGTCGCTTGTCTGATATTACTTATATTATTATTTGTTTGTTATGTTAGTGGAAAAAGAC
AATATACAAGATTTCTCATTTTGATACTTTGTCTTCTATTTAATCTAGGTTACATGCATGCTCCTGCTCATCAGTTATTA
TCTCAAGCTGATAAAGTCATTTTATTACCCAAAAAAGTAAAAATAGATTTTAAAATTATAGAGATACTTCATCAAACTGA
TTATCAAACCTTTATTGTGTCAGCGCAGTTACAAAAAGGAGAAGCCGAACAACGTATTTATCTGCAATGGCGCACGAAAG
AAAAAGTTCAGTTGGGCGACGTATGGCATGGAGAATTGTCCTTGAAACCTATTTCTTCACGGTTAAATTTTTCAGGTTTT
GATAAACAGCAATGGTATTTAGCCAACCGAATTACCGCACGAGCATCAGTAAAAAGCGCTGTTAAACTTACCCAACATTT
TTCATGGCGTGAGCAATTACTTAAAGAGAGTTTAAAACAAACAGAAGGATTAGATTATCAAGGGCTTTTAATAGCGTTAG
CTTTTGGTGAGAGAGCATGGTTACCACAACAAATATGGCAAATTTATCAAAAAACGAATACAGCACATCTTATAGCTATT
TCTGGACTACATATTGGATTAGCAATGAGTATAGGTTATTGGATAGTACGATGTGTTCAAATTTTATTACCATTACGCTG
GATTATCCCTCATTTACCGATGTTAAGCGGTTTACTATTAGCATATATTTATGGACAGCTAGCGGGGTTTGCAATACCAA
CCTCTCGTGCTTGTATAGCACTATTTGTGATTATAAGTTGTCGACTACTACGTGTTTCTTACAACGCTTGGCAACTTTTA
TTGATCGTCACGGCTATATTGCTATTGTTCGATCCATTAATGATTTTATCGTTGAGTTTTTGGCTATCAATAAGTGCGGT
AACGTGTTTAGTCCTCTGGTATCAGGTTTTTCCTTTTTCTTTATTACAATGGCAAGGAAAATCCATATCTATCAGCCCTT
GGCATAAAGTAGAGTGGATTATTCGTATCTTTCACCTACAAATTGGCTTACTATGGCTTTTTACACCGATCCAATTACTT
TTGTTTAATGGTTTTTCTTTAAGTAGCTTTTATGCGAATTTAATAGCGTTACCCATTTATAGTCTCGTATTAGTGCCTCT
TGTATTGTTTGCAACTTTTACACAAGGTGTGTTCTCATCATGGTCTATCGCAAATGAGATAGCCCAAAAAGTGACGTTAA
TTTTGCAAACTTGGCAAGATAATTGGCATTTTGTTTCTCAAACAGAAACCGCATTCATTATTATTGTACTGACGGTACTT
TTTATCATAGCAGTTCGTTTTGTATACGATGTCAAAAAAGTAGATAAAACAAGGAGAAATCTATATTGTCTCAATAAACC
TTATTTTGGCTTCCATTTTACAGCTGAACCAACATTATTTTGTTCTTTAAAACGCTCAATTTATTGCATTGCAACTTTAA
TTGTGACTAGTTGTTTGGGTTATCCGATTTATCAATCTTTTTTTGCATCTGAATGGCGTTTGGATATGTTAGATGTGGGG
CAAGGATTAGCTGTCTTAATAACAAAAAATGGGCGAGGTATCTTATATGATACAGGAAGCGCATGGCGTAGTGGTAGTAT
GGCGCAGCTTGAGATTGTGCCATATTTACAACGACAAGGTATAAGTCTAGAACACGTAATTATTAGCCATGATGACAATG
ATCATGCAGGAGGAACAAAAACAATCTTACAACAATATCCAAAGACCACACTGACGACGGCATCAAGGCAACATTATGGC
AAAACAGACCGCACTTTTTGTCTTTCAGGGCAAAAATGGTATTGGCAAGGATTAAACATCATAGTGCTTTCACCTCATCA
TATTGTAACGCGTGCAAAGAATATGGACTCTTGTGTATTATTGATTTCTGATGGATACAATAACGTATTGTTAACGGGGG
ATGCTGATGTTGCAAGTGAAAATCAATTTGTCTCTCAACTAGATAAAATTGATGTCTTACAAGTTGGACATCATGGGAGT
AAAACCTCGACAGGCTATGCGCTATTACAAAAAACGCGGCCTAAAATCGCGCTTATTTCAAGTGGACGTTGGAATCAGTG
GAAGTTTCCTCATAAACAAGTGATACAGCGTTTAACGCAGTATCAATGTCAAATTTACAATACGGCAGAGACAGGACAAA
TCAGTTTATTGTTTAATAAAAAACAAATTACAATTCAAAGAGCAAGAACAGAATTTTCACCTTGGTACCGTAGATTAATT
GGCTTACAAAAAAAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(558-741)

Competence protein (Competence)

(213-484)

Domain of unknown function (DUF4131) (DUF4131)

(29-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

49.808

97.019

0.483