Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NLY75_RS02160 Genome accession   NZ_CP100432
Coordinates   404643..405260 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis T15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 399643..410260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY75_RS02140 (NLY75_02140) - 400330..401163 (+) 834 WP_023369462.1 energy-coupling factor transporter transmembrane protein EcfT -
  NLY75_RS02145 (NLY75_02145) - 401323..401526 (+) 204 WP_014637517.1 cold-shock protein -
  NLY75_RS02150 (NLY75_02150) rsmG 401716..402429 (-) 714 WP_023369464.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NLY75_RS02155 (NLY75_02155) pbp1a 402488..404662 (-) 2175 WP_023369465.1 penicillin-binding protein PBP1A -
  NLY75_RS02160 (NLY75_02160) recU 404643..405260 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  NLY75_RS02165 (NLY75_02165) - 405326..405865 (+) 540 WP_004195215.1 DUF1273 domain-containing protein -
  NLY75_RS02170 (NLY75_02170) gpsB 405936..406271 (+) 336 WP_023369467.1 cell division regulator GpsB -
  NLY75_RS02180 (NLY75_02180) - 406828..407994 (+) 1167 WP_023369469.1 class I SAM-dependent RNA methyltransferase -
  NLY75_RS02185 (NLY75_02185) - 408004..409458 (+) 1455 WP_023369471.1 cell division site-positioning protein MapZ family protein -
  NLY75_RS02190 (NLY75_02190) - 409678..410160 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=605182 NLY75_RS02160 WP_004194173.1 404643..405260(-) (recU) [Streptococcus suis T15]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=605182 NLY75_RS02160 WP_004194173.1 404643..405260(-) (recU) [Streptococcus suis T15]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATCGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATCGAACACATGAAACAGGTTGTTAAACAAGGTGGCATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473