Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NLY77_RS10880 Genome accession   NZ_CP100431
Coordinates   2169139..2171109 (-) Length   656 a.a.
NCBI ID   WP_024394537.1    Uniprot ID   -
Organism   Streptococcus suis strain 1521251     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2164139..2176109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY77_RS10855 (NLY77_10855) - 2164765..2166021 (+) 1257 WP_172051344.1 ISL3 family transposase -
  NLY77_RS10860 (NLY77_10860) - 2166091..2167440 (-) 1350 WP_002939907.1 glucose-6-phosphate isomerase -
  NLY77_RS10865 (NLY77_10865) - 2167522..2168064 (-) 543 WP_023371733.1 hypothetical protein -
  NLY77_RS10875 (NLY77_10875) tadA 2168337..2168858 (-) 522 WP_024387354.1 tRNA adenosine(34) deaminase TadA -
  NLY77_RS10880 (NLY77_10880) recP/tkt 2169139..2171109 (-) 1971 WP_024394537.1 transketolase Machinery gene
  NLY77_RS10885 (NLY77_10885) ulaG 2171321..2172412 (-) 1092 WP_024387352.1 L-ascorbate 6-phosphate lactonase -
  NLY77_RS10890 (NLY77_10890) - 2172522..2174210 (-) 1689 WP_024387351.1 transcription antiterminator -
  NLY77_RS10895 (NLY77_10895) - 2174335..2174952 (-) 618 WP_024384341.1 hypothetical protein -
  NLY77_RS10900 (NLY77_10900) - 2175037..2175753 (-) 717 WP_024384342.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70788.69 Da        Isoelectric Point: 4.7793

>NTDB_id=605147 NLY77_RS10880 WP_024394537.1 2169139..2171109(-) (recP/tkt) [Streptococcus suis strain 1521251]
MSNLSVNALRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYAPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEVAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=605147 NLY77_RS10880 WP_024394537.1 2169139..2171109(-) (recP/tkt) [Streptococcus suis strain 1521251]
ATGTCAAATCTTTCAGTCAATGCGCTTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCAGCTCAGCCCAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCAGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAATGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCAGG
TGTAGATGCAACAACAGGGCCTCTTGGACAAGGTATCTCAACTGCGACGGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACTTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTCTCAGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGACGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGCACCATTTGAAATTCCAGCTGAAGTCTATGCAGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTAAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCGGTTTACGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCCCTCAACGCAGCGGCTAAAGTATTGCCAACTTTCTTAGGTG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATCCAGTTCGGTGTGCGTGAATTTGCCATGGGTACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCTCTTCAAGGACTTCCTGTGACTT
ATGTCTTCACTCATGACTCAATCGCAGTCGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGCCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGTACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGTAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
TGCTGCCTACAAGGAAGAAATCCTACCAAATGCCATCCGTCGTCGCTTGGCAATTGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATGTCGGTCTTGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCAGCTCCAGCCCAAACAGTTATTGAC
AACTACGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.098

100

0.811