Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8Z53_RS21275 Genome accession   NZ_CP083238
Coordinates   4017659..4017946 (-) Length   95 a.a.
NCBI ID   WP_003181383.1    Uniprot ID   A0A1Y0YNS3
Organism   Bacillus licheniformis strain 2709     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4012659..4022946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS21260 (K8Z53_21005) ade 4013578..4015299 (-) 1722 WP_142782577.1 adenine deaminase -
  K8Z53_RS21265 (K8Z53_21010) - 4015427..4016089 (-) 663 WP_003181388.1 potassium channel family protein -
  K8Z53_RS21270 (K8Z53_21015) - 4016154..4017491 (-) 1338 WP_003181386.1 ATP-binding protein -
  K8Z53_RS21275 (K8Z53_21020) abrB 4017659..4017946 (-) 288 WP_003181383.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8Z53_RS21280 (K8Z53_21025) mreBH 4018253..4019260 (+) 1008 WP_142782578.1 rod-share determining protein MreBH -
  K8Z53_RS21285 (K8Z53_21030) - 4019334..4019465 (+) 132 WP_003181378.1 protein YkpC -
  K8Z53_RS21290 (K8Z53_21035) - 4019556..4020788 (+) 1233 WP_003181374.1 aminopeptidase -
  K8Z53_RS21295 (K8Z53_21040) - 4020926..4021300 (-) 375 WP_003181373.1 YybH family protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10554.41 Da        Isoelectric Point: 6.9823

>NTDB_id=605117 K8Z53_RS21275 WP_003181383.1 4017659..4017946(-) (abrB) [Bacillus licheniformis strain 2709]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIKAALNGVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=605117 K8Z53_RS21275 WP_003181383.1 4017659..4017946(-) (abrB) [Bacillus licheniformis strain 2709]
TTGAAAGCAATAGGAGTTGTGAGAAAAGTAGACGAACTCGGCAGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATCTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATCGTCCTGAAAAAATATAAACCGCACGGTGTGT
GTCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTATGGAAACGGGAAAATTACGCTCAGTCCTGAAGGGGCCGAA
TTGCTTTTGGAAGAAATCAAAGCTGCCTTAAACGGAGTGAAAGCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YNS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537