Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K8Z53_RS20460 Genome accession   NZ_CP083238
Coordinates   3853550..3854452 (-) Length   300 a.a.
NCBI ID   WP_142782554.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3848550..3859452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS20445 (K8Z53_20195) xerC 3848908..3849822 (-) 915 WP_003181750.1 tyrosine recombinase XerC -
  K8Z53_RS20450 (K8Z53_20200) trmFO 3849889..3851194 (-) 1306 Protein_3979 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K8Z53_RS20455 (K8Z53_20205) topA 3851270..3853345 (-) 2076 WP_142782553.1 type I DNA topoisomerase -
  K8Z53_RS20460 (K8Z53_20210) dprA 3853550..3854452 (-) 903 WP_142782554.1 DNA-processing protein DprA Machinery gene
  K8Z53_RS20465 (K8Z53_20215) sucD 3854566..3855468 (-) 903 WP_009328521.1 succinate--CoA ligase subunit alpha -
  K8Z53_RS20470 (K8Z53_20220) sucC 3855487..3856647 (-) 1161 WP_003181739.1 ADP-forming succinate--CoA ligase subunit beta -
  K8Z53_RS20475 (K8Z53_20225) - 3856824..3857105 (-) 282 WP_003181737.1 FlhB-like flagellar biosynthesis protein -
  K8Z53_RS20480 (K8Z53_20230) - 3857102..3858790 (-) 1689 WP_017474806.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 33181.50 Da        Isoelectric Point: 10.1822

>NTDB_id=605116 K8Z53_RS20460 WP_142782554.1 3853550..3854452(-) (dprA) [Bacillus licheniformis strain 2709]
MNDSSELLILLRLRGTLSPSLLTKWWKQDPSLSLTGEKNHLLTKLSLKRSDLCSIRKLAEQELSNVKRLIRSYEAAGVRM
TAISSPDYPASLKTIHDPPPVLFLKGNKKLLHEQRLIGIVGTRCPSLYGKRAAVQLVRELCKNSWTIVSGLAKGIDGLAH
QESIRSKGRTIGVIAGGFNSIYPREHRQLAGQMAESHLLVSEHPPHIKPQIWHFPMRNRLISGLTEGIVVVQGKEKSGSL
ITAYQALEQGREVFAVPGPIFDANSFGPSRLIQEGAKLVLTIEDILNELPPSNAQYTEPV

Nucleotide


Download         Length: 903 bp        

>NTDB_id=605116 K8Z53_RS20460 WP_142782554.1 3853550..3854452(-) (dprA) [Bacillus licheniformis strain 2709]
ATGAACGACAGCAGCGAGCTTTTGATATTGCTCCGCCTTCGCGGCACACTCTCCCCTTCTCTGCTGACCAAGTGGTGGAA
GCAGGACCCTTCCTTGTCTCTTACGGGCGAAAAAAACCATCTTTTAACGAAGCTTTCATTAAAAAGATCAGACTTGTGCT
CCATACGAAAACTGGCGGAACAAGAACTGTCTAATGTTAAACGGCTCATCCGTTCTTACGAGGCGGCCGGCGTCCGCATG
ACCGCCATATCTTCCCCTGATTATCCAGCCAGCCTGAAAACCATTCATGACCCGCCTCCCGTCCTTTTTTTAAAAGGAAA
CAAAAAACTTCTCCATGAACAAAGACTGATCGGAATCGTCGGAACTCGCTGCCCGTCATTATACGGAAAAAGAGCTGCGG
TCCAGCTTGTCAGGGAGCTTTGCAAAAACAGCTGGACGATCGTCAGCGGTCTTGCAAAAGGAATTGACGGTCTCGCCCAT
CAGGAGAGCATCCGTTCAAAGGGAAGGACAATCGGCGTTATCGCGGGCGGATTCAACAGCATATATCCCCGTGAACATCG
CCAGCTCGCCGGACAAATGGCCGAAAGCCACCTGCTGGTATCAGAGCACCCTCCTCACATTAAACCGCAAATATGGCATT
TTCCCATGCGAAATCGGCTGATCAGCGGATTAACGGAAGGAATCGTTGTCGTCCAAGGCAAGGAAAAGAGCGGATCGCTC
ATTACAGCATACCAAGCCCTTGAGCAGGGGCGGGAGGTGTTCGCCGTGCCGGGTCCGATCTTTGATGCCAACTCTTTCGG
TCCTTCAAGGCTGATCCAGGAAGGGGCGAAACTCGTATTAACTATTGAAGACATTTTGAACGAACTTCCGCCTTCAAACG
CTCAATATACAGAGCCTGTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(74-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

57.191

99.667

0.57
  dprA Legionella pneumophila strain ERS1305867

39.404

100

0.397