Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   K8Z53_RS16750 Genome accession   NZ_CP083238
Coordinates   3175399..3175977 (+) Length   192 a.a.
NCBI ID   WP_061576175.1    Uniprot ID   -
Organism   Bacillus licheniformis strain 2709     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3170399..3180977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z53_RS16725 - 3170901..3171407 (-) 507 WP_370539003.1 methyl-accepting chemotaxis protein -
  K8Z53_RS16730 - 3171708..3172079 (-) 372 Protein_3238 protoglobin family protein -
  K8Z53_RS16735 (K8Z53_16555) - 3172300..3173850 (-) 1551 WP_044051823.1 FAD-dependent oxidoreductase -
  K8Z53_RS16740 (K8Z53_16560) - 3173970..3174827 (+) 858 WP_003180352.1 SDR family oxidoreductase -
  K8Z53_RS16745 (K8Z53_16565) - 3174893..3175126 (-) 234 WP_003180353.1 IDEAL domain-containing protein -
  K8Z53_RS16750 (K8Z53_16570) comK 3175399..3175977 (+) 579 WP_061576175.1 competence protein ComK Regulator
  K8Z53_RS16755 (K8Z53_16575) - 3175971..3176336 (-) 366 WP_003180357.1 hypothetical protein -
  K8Z53_RS16760 (K8Z53_16580) - 3176545..3177156 (+) 612 WP_003180359.1 TVP38/TMEM64 family protein -
  K8Z53_RS16765 (K8Z53_16585) lepB 3177169..3177687 (+) 519 WP_003180360.1 signal peptidase I -
  K8Z53_RS16770 (K8Z53_16590) - 3177842..3179617 (-) 1776 WP_003180361.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22404.59 Da        Isoelectric Point: 8.2478

>NTDB_id=605105 K8Z53_RS16750 WP_061576175.1 3175399..3175977(+) (comK) [Bacillus licheniformis strain 2709]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSISSFENQVYRTAWLRTKFIDRIEGN
PMQKKQEFMLYPKEDQNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=605105 K8Z53_RS16750 WP_061576175.1 3175399..3175977(+) (comK) [Bacillus licheniformis strain 2709]
ATGAGCACAGAGGATATGACAAAGGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTTGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAAATTATCGAAAGAAGCT
GCCGCTATTTCGGATCGAGCTATGCGGGAAGAAAAGCGGGCACATATGAAGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAACATTTTTCTTTTCCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCTCATCTTTCGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACAGGATTGAAGGAAAC
CCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAAGAAGACCAGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.085

97.917

0.667