Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NLY77_RS03345 Genome accession   NZ_CP100431
Coordinates   678351..680012 (+) Length   553 a.a.
NCBI ID   WP_024394991.1    Uniprot ID   -
Organism   Streptococcus suis strain 1521251     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 673351..685012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY77_RS03315 (NLY77_03315) - 673637..674545 (-) 909 WP_012775292.1 neutral zinc metallopeptidase -
  NLY77_RS03320 (NLY77_03320) xseA 674714..676057 (+) 1344 WP_024381649.1 exodeoxyribonuclease VII large subunit -
  NLY77_RS03325 (NLY77_03325) - 676032..676247 (+) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  NLY77_RS03330 (NLY77_03330) - 676247..677116 (+) 870 WP_012027575.1 polyprenyl synthetase family protein -
  NLY77_RS03335 (NLY77_03335) - 677109..677930 (+) 822 WP_024417707.1 TlyA family RNA methyltransferase -
  NLY77_RS03340 (NLY77_03340) - 677923..678348 (+) 426 WP_002936261.1 arginine repressor -
  NLY77_RS03345 (NLY77_03345) recN 678351..680012 (+) 1662 WP_024394991.1 DNA repair protein RecN Machinery gene
  NLY77_RS03350 (NLY77_03350) - 680106..680939 (+) 834 WP_087013629.1 DegV family protein -
  NLY77_RS03355 (NLY77_03355) - 680932..681765 (+) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  NLY77_RS03360 (NLY77_03360) - 681737..682333 (+) 597 WP_024394993.1 YpmS family protein -
  NLY77_RS03365 (NLY77_03365) - 682423..682698 (+) 276 WP_002936247.1 HU family DNA-binding protein -
  NLY77_RS03370 (NLY77_03370) - 683214..683681 (+) 468 WP_024394994.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62647.82 Da        Isoelectric Point: 4.6778

>NTDB_id=605093 NLY77_RS03345 WP_024394991.1 678351..680012(+) (recN) [Streptococcus suis strain 1521251]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAGIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQALAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=605093 NLY77_RS03345 WP_024394991.1 678351..680012(+) (recN) [Streptococcus suis strain 1521251]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGGGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATTTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGCATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.333

100

0.447