Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NLY76_RS09710 Genome accession   NZ_CP100430
Coordinates   2001492..2003462 (-) Length   656 a.a.
NCBI ID   WP_044754039.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1996492..2008462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS09685 (NLY76_09685) - 1996956..1998305 (-) 1350 WP_024395433.1 glucose-6-phosphate isomerase -
  NLY76_RS09690 (NLY76_09690) - 1998409..1999830 (-) 1422 WP_052502281.1 glycosyltransferase -
  NLY76_RS09695 (NLY76_09695) - 1999871..2000419 (-) 549 WP_024401062.1 hypothetical protein -
  NLY76_RS09705 (NLY76_09705) tadA 2000690..2001211 (-) 522 WP_044770221.1 tRNA adenosine(34) deaminase TadA -
  NLY76_RS09710 (NLY76_09710) recP/tkt 2001492..2003462 (-) 1971 WP_044754039.1 transketolase Machinery gene
  NLY76_RS09715 (NLY76_09715) ulaG 2003674..2004765 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  NLY76_RS09720 (NLY76_09720) - 2004875..2006563 (-) 1689 WP_024405421.1 transcription antiterminator -
  NLY76_RS09725 (NLY76_09725) - 2006688..2007305 (-) 618 WP_012775380.1 hypothetical protein -
  NLY76_RS09730 (NLY76_09730) - 2007390..2008106 (-) 717 WP_024381206.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70762.61 Da        Isoelectric Point: 4.7793

>NTDB_id=605048 NLY76_RS09710 WP_044754039.1 2001492..2003462(-) (recP/tkt) [Streptococcus suis strain LSS42]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEYGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKAAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAVAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALVLTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=605048 NLY76_RS09710 WP_044754039.1 2001492..2003462(-) (recP/tkt) [Streptococcus suis strain LSS42]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAATCCAGCTCAGCCAAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGCTCCTCTACGGACTTCTTCATTTGTCAGGATTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAATGGGGGTCAAAAACACCAGGTCACCCAGAGTACGGTCACACAGCAGG
TGTAGATGCAACAACAGGTCCACTTGGACAAGGTATCTCAACTGCGACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGTGATGGTTTCCCAATCTTTGACCACTATACCTACGTAATCTGTGGTGATGGCGACTTGATGGAGGGT
GTTTCTGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCCTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGCAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGCTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGTAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTAGCAGCTGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCGGTTTATGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCGCTCAATGCAGCGGCTAAAGTATTGCCAACCTTCCTTGGAG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAATCGC
AATATCCAGTTCGGTGTGCGTGAATTTGCCATGGGTACAATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTAAAAGCAGCAGTTCGTTTGTCAGCCCTTCAAGGTCTTCCTGTGACTT
ACGTCTTCACTCATGACTCTATCGCAGTTGGTGAAGATGGTCCAACTCACGAGCCGATTGAGCATTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGCCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTGTTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGTACGGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTCAAA
GCTGCCAAAGAACTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
TGCTGCCTACAAGGAAGAAATCCTACCAAATGCTATCCGTCGTCGTTTGGCTATCGAAATGGGTGCTACTCAAAGCTGGT
ACAAGTATGTCGGCCTTGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCTGCTCCAGCCCAAACAGTTATTGAC
AACTACGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)

Transketolase, C-terminal domain (Transketolase_C)

(537-649)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.25

100

0.813