Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NLY76_RS09635 Genome accession   NZ_CP100430
Coordinates   1988404..1988853 (-) Length   149 a.a.
NCBI ID   WP_024414076.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983404..1993853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS09620 (NLY76_09620) - 1984037..1984831 (+) 795 WP_024395466.1 formate/nitrite transporter family protein -
  NLY76_RS09625 (NLY76_09625) - 1984920..1986704 (-) 1785 WP_044770222.1 ABC transporter ATP-binding protein -
  NLY76_RS09630 (NLY76_09630) - 1986705..1988411 (-) 1707 WP_044686373.1 ABC transporter ATP-binding protein -
  NLY76_RS09635 (NLY76_09635) rcrR 1988404..1988853 (-) 450 WP_024414076.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  NLY76_RS09640 (NLY76_09640) - 1989075..1990091 (+) 1017 WP_012027922.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NLY76_RS09645 (NLY76_09645) galU 1990136..1991035 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NLY76_RS09650 (NLY76_09650) - 1991055..1991732 (-) 678 WP_044754047.1 rhomboid family intramembrane serine protease -
  NLY76_RS09655 (NLY76_09655) - 1991716..1992258 (-) 543 WP_024414567.1 5-formyltetrahydrofolate cyclo-ligase -
  NLY76_RS09660 (NLY76_09660) - 1992299..1993426 (-) 1128 WP_044754044.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17567.07 Da        Isoelectric Point: 7.5183

>NTDB_id=605047 NLY76_RS09635 WP_024414076.1 1988404..1988853(-) (rcrR) [Streptococcus suis strain LSS42]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSDLETFVKDIEAELKISKSVASNLVKRMEKNDFIQ
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLVRQVADQLKENIKRYKETNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=605047 NLY76_RS09635 WP_024414076.1 1988404..1988853(-) (rcrR) [Streptococcus suis strain LSS42]
ATGGGACATACTATTGCAGATTTTCGGAATTTACTCAATCAAATTGAACAAATTAGTGAAACGATTGCCAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGGTGGGCTTTGCGTTTCATAGCAGAACGGTCAGACCTTGAAACCTTTGTCAAAG
ATATTGAAGCGGAGTTGAAAATTTCCAAATCCGTTGCCAGCAATCTGGTTAAGCGAATGGAGAAAAATGACTTTATTCAG
GTTTTGCCATCTCAGTTTGATAGACGTTACAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTTTTTAGAGGTATTCAAAAGGAAGAATTTGATTTGGTTAGACAAGTAGCCG
ATCAATTAAAAGAAAATATTAAACGTTATAAGGAGACGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416