Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   K9O37_RS17845 Genome accession   NZ_CP083181
Coordinates   3665838..3666992 (+) Length   384 a.a.
NCBI ID   WP_119047965.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3660838..3671992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS17820 (K9O37_17735) - 3660989..3662203 (+) 1215 WP_001177963.1 oxygenase MpaB family protein -
  K9O37_RS17825 (K9O37_17740) - 3662273..3662479 (-) 207 WP_000182542.1 hypothetical protein -
  K9O37_RS17830 (K9O37_17745) - 3662533..3664647 (-) 2115 WP_001120678.1 TonB-dependent copper receptor -
  K9O37_RS17835 (K9O37_17750) - 3664720..3665148 (-) 429 WP_000231977.1 DUF2946 family protein -
  K9O37_RS17840 (K9O37_17755) def 3665185..3665715 (-) 531 WP_001196539.1 peptide deformylase -
  K9O37_RS17845 (K9O37_17760) tsaP 3665838..3666992 (+) 1155 WP_119047965.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  K9O37_RS17850 (K9O37_17765) dprA 3667013..3668143 (+) 1131 WP_002013158.1 DNA-processing protein DprA Machinery gene
  K9O37_RS17855 (K9O37_17770) - 3668194..3668763 (+) 570 WP_000633612.1 L-threonylcarbamoyladenylate synthase -
  K9O37_RS17860 (K9O37_17775) - 3669155..3670075 (-) 921 WP_000084546.1 DMT family transporter -
  K9O37_RS17865 (K9O37_17780) - 3670181..3670822 (-) 642 WP_000184769.1 TetR/AcrR family transcriptional regulator -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42331.23 Da        Isoelectric Point: 8.2524

>NTDB_id=605036 K9O37_RS17845 WP_119047965.1 3665838..3666992(+) (tsaP) [Acinetobacter baumannii strain AB43]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTNLQPQVHVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGVQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMIFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=605036 K9O37_RS17845 WP_119047965.1 3665838..3666992(+) (tsaP) [Acinetobacter baumannii strain AB43]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTAAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCGCACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTCGGTATTATCCGTCGCTATACAGGTCAAACCACAAACC
TGCAACCACAAGTTCACGTCGAAGCATTAAATAATAGCGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGGGTACTTGCAGG
AAAAGGCCAGACCATTTACGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCCGTTTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTATCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAGCAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACCCAGGGCGTTCAAGTAGGCCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGATTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

98.698

100

0.987