Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NLY76_RS07695 Genome accession   NZ_CP100430
Coordinates   1584604..1586265 (-) Length   553 a.a.
NCBI ID   WP_015647204.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579604..1591265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS07665 (NLY76_07665) - 1579666..1580925 (+) 1260 WP_015647200.1 hydroxymethylglutaryl-CoA reductase, degradative -
  NLY76_RS07670 (NLY76_07670) - 1580945..1581412 (-) 468 WP_015647201.1 GNAT family N-acetyltransferase -
  NLY76_RS07675 (NLY76_07675) - 1581918..1582193 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  NLY76_RS07680 (NLY76_07680) - 1582283..1582879 (-) 597 WP_002936249.1 YpmS family protein -
  NLY76_RS07685 (NLY76_07685) - 1582851..1583684 (-) 834 WP_041179398.1 SGNH/GDSL hydrolase family protein -
  NLY76_RS07690 (NLY76_07690) - 1583677..1584510 (-) 834 WP_015647203.1 DegV family protein -
  NLY76_RS07695 (NLY76_07695) recN 1584604..1586265 (-) 1662 WP_015647204.1 DNA repair protein RecN Machinery gene
  NLY76_RS07700 (NLY76_07700) - 1586268..1586693 (-) 426 WP_002936261.1 arginine repressor -
  NLY76_RS07705 (NLY76_07705) - 1586686..1587507 (-) 822 WP_015647205.1 TlyA family RNA methyltransferase -
  NLY76_RS07710 (NLY76_07710) - 1587500..1588369 (-) 870 WP_044770040.1 polyprenyl synthetase family protein -
  NLY76_RS07715 (NLY76_07715) - 1588369..1588584 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  NLY76_RS07720 (NLY76_07720) xseA 1588559..1589902 (-) 1344 WP_044770038.1 exodeoxyribonuclease VII large subunit -
  NLY76_RS07725 (NLY76_07725) - 1590069..1590977 (+) 909 WP_024389095.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62754.87 Da        Isoelectric Point: 4.6317

>NTDB_id=605031 NLY76_RS07695 WP_015647204.1 1584604..1586265(-) (recN) [Streptococcus suis strain LSS42]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
FEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDSDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSESRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=605031 NLY76_RS07695 WP_015647204.1 1584604..1586265(-) (recN) [Streptococcus suis strain LSS42]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGAAAGTCTATTATCATCGATGCCATGAACCTGATGTTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCTGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
TTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGCCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGGCAAATGGTTAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCTCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAGTTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGGGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATTCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGTGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATCTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCGAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCACTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCTCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448