Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   K9O37_RS16885 Genome accession   NZ_CP083181
Coordinates   3460473..3462701 (+) Length   742 a.a.
NCBI ID   WP_163077980.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB43     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455473..3467701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9O37_RS16860 (K9O37_16790) lnt 3455859..3457418 (+) 1560 WP_001203100.1 apolipoprotein N-acyltransferase -
  K9O37_RS16865 (K9O37_16795) - 3457420..3457758 (-) 339 WP_000434938.1 tRNA-binding protein -
  K9O37_RS16870 (K9O37_16800) - 3457903..3458247 (-) 345 WP_000643174.1 hypothetical protein -
  K9O37_RS16875 (K9O37_16805) gspG 3458514..3459095 (-) 582 WP_000865304.1 type II secretion system major pseudopilin GspG -
  K9O37_RS16880 (K9O37_16810) gspF 3459119..3460324 (-) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  K9O37_RS16885 (K9O37_16815) priA 3460473..3462701 (+) 2229 WP_163077980.1 primosomal protein N' Machinery gene
  K9O37_RS16890 (K9O37_16820) - 3462778..3464619 (+) 1842 WP_000008979.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  K9O37_RS16895 (K9O37_16825) - 3464785..3465660 (+) 876 WP_005112355.1 Hsp33 family molecular chaperone HslO -
  K9O37_RS16900 (K9O37_16830) - 3465798..3466409 (+) 612 WP_001105722.1 LysE family translocator -
  K9O37_RS16905 (K9O37_16835) - 3466560..3467516 (+) 957 WP_123785555.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83952.80 Da        Isoelectric Point: 8.6622

>NTDB_id=605028 K9O37_RS16885 WP_163077980.1 3460473..3462701(+) (priA) [Acinetobacter baumannii strain AB43]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLIDCTLEPHDFSPAPVQLAQMPLTLNDDQKKATQHVINAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPNHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=605028 K9O37_RS16885 WP_163077980.1 3460473..3462701(+) (priA) [Acinetobacter baumannii strain AB43]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGACAATGCCGAAGCTTTACTAAAACGTTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGTGGTGTAGAAACTGCAACACTTAAAGCACTACAAAAGAAAGGGCTAATAGA
CTGTACACTTGAGCCTCATGACTTTAGCCCAGCACCTGTGCAATTGGCTCAAATGCCACTCACGTTAAATGATGACCAAA
AGAAAGCAACTCAGCACGTCATTAATGCACAGCATCAATACCAAGCATTTTTACTAGATGGCTTAACTGGAAGTGGTAAA
ACTGAAGTTTATTTGCACATCATGCATGAGGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTGCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCAGGCTTAAATGACTCTA
AACGCTTACAAGCTTGGCAACAGGCACAAACTGGTAAAGCATCTATTATTTTAGGGACTCGCTCAGCCATTTATACACCG
CTGCCACGATTGGGCCTCATCATTTTAGATGAAGAACATGATCTGTCTTATAAGCAACAAGAAGGCTTCCGTTACCATGC
CCGTGATGTCGCGCTTTATCGGGGCCACTTACAAGGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGTATCGACAGTT
ATTACTTAGTAGAAACTGGCAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGACGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCGA
ATTGTCCACATTGTGATGCACATTTTACGTTGCACACTCAGCCCTACTCTTACTTACATTGTCACCACTGTGGCACCGTT
CATCGCCTGCCAGACCACTGCCCTGAATGTCAGCAAAAGAGCCTCAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTCCCAAATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAACAAAATAAACCTTCGATTTTGCTCGGTACTCAAATGTTGGCAAAAGGTCACCATTTTCCA
CATGTGACCTTGGTTGCTATTTTAGACATCGATGCAGGTTTATTGAGTGTCGATATTCGGGCGCCAGAACGTACTGCACA
GTTGATTGTACAAGTCGCTGGTCGTGCAGGTCGTGGAGAACACAAAGGCCATGTTTATTTACAGACTTTAAGGCCGGATC
ACCCTTTACTTACCACACTCATCGAAAAAGATTATCGTGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTTGCTTTA
CTCCCCCCTTATCGTTATGCAGTCTTAATTCGTGCTGAGTCAAAAGATCGTGACTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATTGCAGGTGACATTGTTGATATCTGGGGGCCAATTCCAGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.305

100

0.973