Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   NLY76_RS03865 Genome accession   NZ_CP100430
Coordinates   800333..800815 (-) Length   160 a.a.
NCBI ID   WP_044769851.1    Uniprot ID   -
Organism   Streptococcus suis strain LSS42     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 795333..805815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY76_RS03840 (NLY76_03840) pheT 795642..798041 (+) 2400 WP_044769856.1 phenylalanine--tRNA ligase subunit beta -
  NLY76_RS03845 (NLY76_03845) - 798096..798362 (+) 267 WP_044769855.1 DUF2087 domain-containing protein -
  NLY76_RS03850 (NLY76_03850) - 798383..798685 (-) 303 WP_044666750.1 hypothetical protein -
  NLY76_RS03855 (NLY76_03855) - 798878..799621 (+) 744 WP_044769854.1 polyphosphate polymerase domain-containing protein -
  NLY76_RS03860 (NLY76_03860) - 799608..800285 (+) 678 WP_044769852.1 DUF4956 domain-containing protein -
  NLY76_RS03865 (NLY76_03865) mutX 800333..800815 (-) 483 WP_044769851.1 8-oxo-dGTP diphosphatase Machinery gene
  NLY76_RS03870 (NLY76_03870) folE 800982..801545 (+) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  NLY76_RS03875 (NLY76_03875) folP 801554..802366 (+) 813 WP_015646757.1 dihydropteroate synthase -
  NLY76_RS03880 (NLY76_03880) folB 802359..802721 (+) 363 WP_012027113.1 dihydroneopterin aldolase -
  NLY76_RS03885 (NLY76_03885) folK 802718..803206 (+) 489 WP_044685069.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  NLY76_RS03890 (NLY76_03890) - 803257..804567 (+) 1311 WP_044666746.1 GntP family permease -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18568.85 Da        Isoelectric Point: 4.3696

>NTDB_id=605008 NLY76_RS03865 WP_044769851.1 800333..800815(-) (mutX) [Streptococcus suis strain LSS42]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREVFEETGLTVTEHALKGVITFPDF
TPNTDWYTYVFKITGFEGNLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGDKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=605008 NLY76_RS03865 WP_044769851.1 800333..800815(-) (mutX) [Streptococcus suis strain LSS42]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGCAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAGTCTTTGAGGAAACTGGGCTTACTGTAACAGAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAATCTTATTGACTGCAATGAAGGTGA
CTTAGAATGGGTTCCTTATGACCAAGTGCTCTCCAAACCAACCTGGGAAGGGGACAGACATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGACAAACTGCTTGATTATAGCGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

80.392

95.625

0.769