Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E36_RS04390 Genome accession   NZ_CP083177
Coordinates   1095330..1096031 (-) Length   233 a.a.
NCBI ID   WP_004114219.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY1     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1090330..1101031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E36_RS04375 (K9E36_04390) - 1090821..1091798 (-) 978 WP_248911434.1 sugar-binding domain-containing protein -
  K9E36_RS04380 (K9E36_04395) - 1092571..1093596 (+) 1026 WP_248911708.1 FAD:protein FMN transferase -
  K9E36_RS04385 (K9E36_04400) - 1093914..1095323 (-) 1410 WP_020760678.1 HAMP domain-containing sensor histidine kinase -
  K9E36_RS04390 (K9E36_04405) scnR 1095330..1096031 (-) 702 WP_004114219.1 response regulator transcription factor Regulator
  K9E36_RS04395 (K9E36_04410) - 1096171..1096935 (+) 765 WP_103013283.1 ABC transporter ATP-binding protein -
  K9E36_RS04400 (K9E36_04415) - 1096932..1097657 (+) 726 WP_248911435.1 ABC transporter permease -
  K9E36_RS04405 (K9E36_04420) - 1097671..1098435 (+) 765 WP_004114222.1 ABC transporter permease -
  K9E36_RS04410 (K9E36_04425) - 1098869..1100473 (+) 1605 WP_103013285.1 type I restriction-modification system subunit M -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26467.58 Da        Isoelectric Point: 4.8946

>NTDB_id=604952 K9E36_RS04390 WP_004114219.1 1095330..1096031(-) (scnR) [Gardnerella vaginalis strain JNFY1]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604952 K9E36_RS04390 WP_004114219.1 1095330..1096031(-) (scnR) [Gardnerella vaginalis strain JNFY1]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502