Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E39_RS04125 Genome accession   NZ_CP083174
Coordinates   1051581..1052282 (-) Length   233 a.a.
NCBI ID   WP_248912079.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY9     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1046581..1057282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E39_RS04110 (K9E39_04120) - 1047060..1048037 (-) 978 WP_004138670.1 sugar-binding domain-containing protein -
  K9E39_RS04115 (K9E39_04125) - 1048826..1049857 (+) 1032 WP_248912292.1 FAD:protein FMN transferase -
  K9E39_RS04120 (K9E39_04130) - 1050165..1051574 (-) 1410 WP_004138681.1 HAMP domain-containing sensor histidine kinase -
  K9E39_RS04125 (K9E39_04135) scnR 1051581..1052282 (-) 702 WP_248912079.1 response regulator transcription factor Regulator
  K9E39_RS04130 (K9E39_04140) - 1052422..1053186 (+) 765 WP_004138603.1 ABC transporter ATP-binding protein -
  K9E39_RS04135 (K9E39_04145) - 1053183..1053908 (+) 726 WP_248912080.1 ABC transporter permease -
  K9E39_RS04140 (K9E39_04150) - 1053922..1054686 (+) 765 WP_004114222.1 ABC transporter permease -
  K9E39_RS04145 (K9E39_04155) - 1054928..1055404 (+) 477 Protein_794 type I restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26483.57 Da        Isoelectric Point: 4.8946

>NTDB_id=604941 K9E39_RS04125 WP_248912079.1 1051581..1052282(-) (scnR) [Gardnerella vaginalis strain JNFY9]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCESAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604941 K9E39_RS04125 WP_248912079.1 1051581..1052282(-) (scnR) [Gardnerella vaginalis strain JNFY9]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAATCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATAAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(13-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502