Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E40_RS04995 Genome accession   NZ_CP083173
Coordinates   1266660..1267361 (+) Length   233 a.a.
NCBI ID   WP_248911808.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY11     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261660..1272361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E40_RS04975 (K9E40_04990) - 1263540..1264016 (-) 477 Protein_959 type I restriction endonuclease subunit R -
  K9E40_RS04980 (K9E40_04995) - 1264256..1265020 (-) 765 WP_004114222.1 ABC transporter permease -
  K9E40_RS04985 (K9E40_05000) - 1265034..1265759 (-) 726 WP_004138748.1 ABC transporter permease -
  K9E40_RS04990 (K9E40_05005) - 1265756..1266520 (-) 765 WP_174160443.1 ABC transporter ATP-binding protein -
  K9E40_RS04995 (K9E40_05010) scnR 1266660..1267361 (+) 702 WP_248911808.1 response regulator transcription factor Regulator
  K9E40_RS05000 (K9E40_05015) - 1267368..1268777 (+) 1410 WP_032840656.1 HAMP domain-containing sensor histidine kinase -
  K9E40_RS05005 (K9E40_05020) - 1269095..1270117 (-) 1023 WP_004138708.1 FAD:protein FMN transferase -
  K9E40_RS05010 (K9E40_05025) - 1270909..1271883 (+) 975 WP_248911809.1 sugar-binding domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26434.43 Da        Isoelectric Point: 4.8019

>NTDB_id=604939 K9E40_RS04995 WP_248911808.1 1266660..1267361(+) (scnR) [Gardnerella vaginalis strain JNFY11]
MNQDNYLLNKHILLVDDEQELLDMVVSILNEYGFHNITTAKSMKDAVEATQTLRPELAILDVMLPDGNGFELMEKIKQYS
DCPVLFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604939 K9E40_RS04995 WP_248911808.1 1266660..1267361(+) (scnR) [Gardnerella vaginalis strain JNFY11]
ATGAATCAGGATAATTATTTGTTGAACAAGCATATTCTGCTTGTTGATGACGAGCAGGAACTTTTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTCATAATATAACTACTGCAAAAAGCATGAAAGATGCTGTAGAAGCAACACAAACATTAC
GTCCAGAATTAGCAATACTTGATGTTATGCTCCCTGACGGTAATGGATTTGAGTTAATGGAGAAGATAAAACAATATAGT
GATTGTCCTGTTTTGTTTCTTACTGCTTGCGGTGAGGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGATGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.915

95.708

0.506