Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E41_RS04295 Genome accession   NZ_CP083172
Coordinates   1074826..1075527 (-) Length   233 a.a.
NCBI ID   WP_004573677.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY13     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069826..1080527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E41_RS04280 (K9E41_04300) - 1070304..1071281 (-) 978 WP_004138670.1 sugar-binding domain-containing protein -
  K9E41_RS04285 (K9E41_04305) - 1072070..1073092 (+) 1023 WP_004138708.1 FAD:protein FMN transferase -
  K9E41_RS04290 (K9E41_04310) - 1073410..1074819 (-) 1410 WP_032840656.1 HAMP domain-containing sensor histidine kinase -
  K9E41_RS04295 (K9E41_04315) scnR 1074826..1075527 (-) 702 WP_004573677.1 response regulator transcription factor Regulator
  K9E41_RS04300 (K9E41_04320) - 1075667..1076431 (+) 765 WP_174160443.1 ABC transporter ATP-binding protein -
  K9E41_RS04305 (K9E41_04325) - 1076428..1077153 (+) 726 WP_004138748.1 ABC transporter permease -
  K9E41_RS04310 (K9E41_04330) - 1077167..1077931 (+) 765 WP_004114222.1 ABC transporter permease -
  K9E41_RS04315 (K9E41_04335) - 1078085..1078423 (+) 339 WP_246943513.1 hypothetical protein -
  K9E41_RS04320 (K9E41_04340) - 1078671..1080407 (+) 1737 WP_103013288.1 FTR1 family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26435.42 Da        Isoelectric Point: 4.7224

>NTDB_id=604935 K9E41_RS04295 WP_004573677.1 1074826..1075527(-) (scnR) [Gardnerella vaginalis strain JNFY13]
MNQDDYLLNKHILLVDDEQELLDMVVSILNEYGFHNITTAKSMKDAVEATQTLRPELAILDVMLPDGNGFELMEKIKQYS
DCPVLFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604935 K9E41_RS04295 WP_004573677.1 1074826..1075527(-) (scnR) [Gardnerella vaginalis strain JNFY13]
ATGAATCAGGATGATTATTTGTTGAACAAGCATATTCTGCTTGTTGATGACGAGCAGGAACTTTTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTCATAATATAACTACTGCAAAAAGCATGAAAGATGCTGTAGAAGCAACACAAACATTAC
GTCCAGAATTAGCAATACTTGATGTTATGCTCCCTGACGGTAATGGATTTGAGTTAATGGAGAAGATAAAACAATATAGT
GATTGTCCTGTTTTGTTTCTTACTGCTTGCGGTGAGGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGATGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.915

95.708

0.506