Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NLG45_RS06760 Genome accession   NZ_CP100428
Coordinates   1364544..1365113 (-) Length   189 a.a.
NCBI ID   WP_000872874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RMSA24     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1359544..1370113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLG45_RS06720 (NLG45_06720) - 1360018..1360626 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  NLG45_RS06725 (NLG45_06725) rplL 1360801..1361169 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NLG45_RS06730 (NLG45_06730) rplJ 1361212..1361712 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  NLG45_RS06735 (NLG45_06735) rplA 1361984..1362676 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  NLG45_RS06740 (NLG45_06740) rplK 1362884..1363306 (-) 423 WP_254414448.1 50S ribosomal protein L11 -
  NLG45_RS06745 (NLG45_06745) nusG 1363487..1364035 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NLG45_RS06750 (NLG45_06750) secE 1364048..1364230 (-) 183 WP_254414449.1 preprotein translocase subunit SecE -
  NLG45_RS06755 (NLG45_06755) rpmG 1364286..1364429 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  NLG45_RS06760 (NLG45_06760) sigH 1364544..1365113 (-) 570 WP_000872874.1 sigma-70 family RNA polymerase sigma factor Regulator
  NLG45_RS06765 (NLG45_06765) - 1365194..1365718 (-) 525 WP_000664738.1 NYN domain-containing protein -
  NLG45_RS06770 (NLG45_06770) rlmB 1365718..1366464 (-) 747 WP_000390333.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NLG45_RS06775 (NLG45_06775) - 1366472..1366876 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NLG45_RS06780 (NLG45_06780) cysS 1366869..1368269 (-) 1401 WP_000631974.1 cysteine--tRNA ligase -
  NLG45_RS06785 (NLG45_06785) cysE 1368253..1368900 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=604933 NLG45_RS06760 WP_000872874.1 1364544..1365113(-) (sigH) [Staphylococcus aureus strain RMSA24]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCKQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=604933 NLG45_RS06760 WP_000872874.1 1364544..1365113(-) (sigH) [Staphylococcus aureus strain RMSA24]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTAAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984