Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E42_RS04825 Genome accession   NZ_CP083171
Coordinates   1209681..1210382 (+) Length   233 a.a.
NCBI ID   WP_004114219.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY14     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204681..1215382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E42_RS04805 (K9E42_04820) - 1206561..1207037 (-) 477 Protein_924 type I restriction endonuclease subunit R -
  K9E42_RS04810 (K9E42_04825) - 1207277..1208041 (-) 765 WP_004114222.1 ABC transporter permease -
  K9E42_RS04815 (K9E42_04830) - 1208055..1208780 (-) 726 WP_004138748.1 ABC transporter permease -
  K9E42_RS04820 (K9E42_04835) - 1208777..1209541 (-) 765 WP_004138603.1 ABC transporter ATP-binding protein -
  K9E42_RS04825 (K9E42_04840) scnR 1209681..1210382 (+) 702 WP_004114219.1 response regulator transcription factor Regulator
  K9E42_RS04830 (K9E42_04845) - 1210389..1211798 (+) 1410 WP_020760678.1 HAMP domain-containing sensor histidine kinase -
  K9E42_RS04835 (K9E42_04850) - 1212116..1213144 (-) 1029 WP_248898803.1 FAD:protein FMN transferase -
  K9E42_RS04840 (K9E42_04855) - 1213935..1214909 (+) 975 WP_032834159.1 sugar-binding domain-containing protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26467.58 Da        Isoelectric Point: 4.8946

>NTDB_id=604933 K9E42_RS04825 WP_004114219.1 1209681..1210382(+) (scnR) [Gardnerella vaginalis strain JNFY14]
MNLNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAEVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604933 K9E42_RS04825 WP_004114219.1 1209681..1210382(+) (scnR) [Gardnerella vaginalis strain JNFY14]
ATGAATCTGAATGATTATTTATTGAACAAGCATCTGCTGCTTGTTGACGATGAGCAGGAACTTCTAGATATGGTTGTGTC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCCGTAGAAGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAACTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCAGAAGTAATAAAAAATAACGAACATATTCCACTTACA
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCGCATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502