Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E43_RS05435 Genome accession   NZ_CP083170
Coordinates   1367672..1368373 (+) Length   233 a.a.
NCBI ID   WP_248899074.1    Uniprot ID   -
Organism   Gardnerella piotii strain JNFY15     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1362672..1373373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E43_RS05410 (K9E43_05415) - 1362830..1364002 (+) 1173 WP_248899071.1 hypothetical protein -
  K9E43_RS05415 (K9E43_05420) - 1364079..1364867 (+) 789 WP_248899072.1 permease -
  K9E43_RS05420 (K9E43_05425) - 1365222..1365986 (-) 765 WP_248899073.1 ABC transporter permease -
  K9E43_RS05425 (K9E43_05430) - 1366046..1366771 (-) 726 WP_016784736.1 ABC transporter permease -
  K9E43_RS05430 (K9E43_05435) - 1366768..1367532 (-) 765 WP_016784738.1 ABC transporter ATP-binding protein -
  K9E43_RS05435 (K9E43_05440) scnR 1367672..1368373 (+) 702 WP_248899074.1 response regulator transcription factor Regulator
  K9E43_RS05440 (K9E43_05445) - 1368380..1369786 (+) 1407 WP_020973692.1 sensor histidine kinase -
  K9E43_RS05445 (K9E43_05450) - 1370024..1371238 (+) 1215 WP_248899075.1 argininosuccinate synthase -
  K9E43_RS05450 (K9E43_05455) argH 1371276..1372793 (+) 1518 WP_248899076.1 argininosuccinate lyase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26480.68 Da        Isoelectric Point: 5.0030

>NTDB_id=604930 K9E43_RS05435 WP_248899074.1 1367672..1368373(+) (scnR) [Gardnerella piotii strain JNFY15]
MNRNDYLLNKHLLLVDDEQELLDMVVSILNEYGFYNITTAKSIKDAVEATQKLRPELAILDVMLPDGNGFELMKQIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEYDLLSALYRNAGCIVTIDVLCEAAWGANPFGYENSLMAHIRRIREKIELNPSQPVSLITVKGLGYKLIVE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604930 K9E43_RS05435 WP_248899074.1 1367672..1368373(+) (scnR) [Gardnerella piotii strain JNFY15]
ATGAATCGGAATGATTATTTATTGAACAAGCATCTGCTACTTGTTGATGATGAGCAGGAACTTCTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGTATAAAAGATGCAGTAGAGGCAACACAAAAATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGAAGCAGATAAAACAATATAGT
GATTGTCCTATCTTATTCCTTACTGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGAGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACGTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CCATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCACTCACA
GCCAAAGAATATGATTTACTTTCTGCACTTTATAGAAATGCTGGATGCATTGTAACAATTGACGTGTTATGTGAAGCTGC
ATGGGGAGCTAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAACCTGTTTCTTTAATAACAGTTAAAGGCTTAGGATATAAGCTGATTGTGGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(13-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.466

95.708

0.502