Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   K9E44_RS00360 Genome accession   NZ_CP083169
Coordinates   89365..90066 (-) Length   233 a.a.
NCBI ID   WP_248901292.1    Uniprot ID   -
Organism   Gardnerella vaginalis strain JNFY17     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 84365..95066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9E44_RS00345 (K9E44_00345) argH 84934..86463 (-) 1530 WP_248901289.1 argininosuccinate lyase -
  K9E44_RS00350 (K9E44_00350) - 86500..87714 (-) 1215 WP_248901290.1 argininosuccinate synthase -
  K9E44_RS00355 (K9E44_00355) - 87952..89358 (-) 1407 WP_248901291.1 HAMP domain-containing sensor histidine kinase -
  K9E44_RS00360 (K9E44_00360) scnR 89365..90066 (-) 702 WP_248901292.1 response regulator transcription factor Regulator
  K9E44_RS00365 (K9E44_00365) - 90206..90970 (+) 765 WP_004129738.1 ABC transporter ATP-binding protein -
  K9E44_RS00370 (K9E44_00370) - 90967..91692 (+) 726 WP_004132069.1 ABC transporter permease -
  K9E44_RS00375 (K9E44_00375) - 91752..92516 (+) 765 WP_032816711.1 ABC transporter permease -
  K9E44_RS00380 (K9E44_00380) - 92775..94415 (-) 1641 WP_248901293.1 ATP-binding protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26511.59 Da        Isoelectric Point: 5.0250

>NTDB_id=604924 K9E44_RS00360 WP_248901292.1 89365..90066(-) (scnR) [Gardnerella vaginalis strain JNFY17]
MNRNDYLLNKHLLLVDDERELLDMVVSILNEYGFYNITTAKSVKDAVEATQTLRPELAILDVMLPDGNGFELMEKIKQYS
DCPILFLTACGEDEDKFKGFDLGADDYIVKPFLPKELTFRIMAILRRSYKSENPIVKLKNSQIDFSSAQVIKNNEHIPLT
AKEHDLLSALYRNAGRIVTIDALCEAAWGDNPFGYENSLMAHIRRIREKIELNPSQPVSLVTVKGLGYKLILE

Nucleotide


Download         Length: 702 bp        

>NTDB_id=604924 K9E44_RS00360 WP_248901292.1 89365..90066(-) (scnR) [Gardnerella vaginalis strain JNFY17]
ATGAATCGGAATGATTATTTATTGAACAAGCATCTGCTACTTGTTGATGATGAGCGGGAACTTCTAGATATGGTTGTATC
CATATTAAACGAATACGGTTTTTATAATATAACGACTGCAAAAAGCGTGAAAGATGCCGTAGAAGCAACACAAACATTAC
GTCCAGAATTAGCAATCCTTGATGTTATGCTCCCCGACGGTAATGGGTTTGAGTTAATGGAGAAGATAAAACAATATAGT
GATTGTCCTATTTTATTCCTTACGGCTTGCGGTGAAGATGAAGATAAGTTTAAGGGATTTGACTTAGGCGCAGACGATTA
TATTGTAAAGCCGTTTCTTCCAAAAGAGCTAACTTTTCGCATTATGGCAATTTTAAGACGAAGCTACAAGAGCGAAAATC
CAATTGTTAAACTGAAAAATAGTCAGATTGATTTTTCTTCTGCCCAAGTAATAAAAAATAACGAACATATTCCGCTTACG
GCCAAAGAACACGATTTGCTTTCTGCTTTATATAGAAATGCGGGACGTATCGTAACAATTGACGCGTTATGTGAAGCTGC
ATGGGGTGATAATCCTTTTGGATATGAAAATTCTTTAATGGCACATATACGTCGTATCAGAGAAAAAATAGAACTCAATC
CATCGCAGCCTGTTTCATTGGTAACAGTAAAAGGTTTAGGATACAAGCTGATTTTGGAGTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(13-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

52.036

94.85

0.494