Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8Z20_RS28280 Genome accession   NZ_CP083156
Coordinates   5421638..5421922 (-) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain ABTS-1857     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5416638..5426922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z20_RS28245 (K8Z20_27960) tmk 5416830..5417456 (+) 627 WP_000677214.1 dTMP kinase -
  K8Z20_RS28250 (K8Z20_27965) holB 5417492..5418475 (+) 984 WP_000169563.1 DNA polymerase III subunit delta' -
  K8Z20_RS28255 (K8Z20_27970) - 5418481..5419308 (+) 828 WP_000272429.1 stage 0 sporulation family protein -
  K8Z20_RS28260 (K8Z20_27975) yabA 5419323..5419673 (+) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  K8Z20_RS28265 (K8Z20_27980) - 5419756..5420496 (+) 741 WP_001055369.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K8Z20_RS28270 (K8Z20_27985) - 5420483..5420773 (+) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  K8Z20_RS28275 (K8Z20_27990) rsmI 5420742..5421617 (+) 876 WP_000267822.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K8Z20_RS28280 (K8Z20_27995) abrB 5421638..5421922 (-) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8Z20_RS28285 (K8Z20_28000) metG 5422408..5424390 (+) 1983 WP_000134135.1 methionine--tRNA ligase -
  K8Z20_RS28290 (K8Z20_28005) - 5424557..5425324 (+) 768 WP_000895843.1 TatD family hydrolase -
  K8Z20_RS28295 (K8Z20_28010) rnmV 5425539..5426096 (+) 558 WP_000692835.1 ribonuclease M5 -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=604920 K8Z20_RS28280 WP_000843036.1 5421638..5421922(-) (abrB) [Bacillus thuringiensis strain ABTS-1857]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=604920 K8Z20_RS28280 WP_000843036.1 5421638..5421922(-) (abrB) [Bacillus thuringiensis strain ABTS-1857]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851