Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K8Z20_RS28080 Genome accession   NZ_CP083156
Coordinates   5384327..5385454 (+) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus thuringiensis strain ABTS-1857     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5379327..5390454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z20_RS28050 (K8Z20_27765) spoIIIJ 5379366..5380133 (-) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -
  K8Z20_RS28055 (K8Z20_27770) rnpA 5380186..5380533 (-) 348 WP_000726621.1 ribonuclease P protein component -
  K8Z20_RS28060 (K8Z20_27775) rpmH 5380610..5380744 (-) 135 WP_000831901.1 50S ribosomal protein L34 -
  K8Z20_RS28065 (K8Z20_27780) dnaA 5381309..5382649 (+) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  K8Z20_RS28070 (K8Z20_27785) dnaN 5382829..5383974 (+) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  K8Z20_RS28075 (K8Z20_27790) yaaA 5384102..5384314 (+) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  K8Z20_RS28080 (K8Z20_27795) recF 5384327..5385454 (+) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  K8Z20_RS28085 (K8Z20_27800) gyrB 5385493..5387415 (+) 1923 WP_021727685.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K8Z20_RS28090 (K8Z20_27805) gyrA 5387504..5389975 (+) 2472 WP_001282864.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=604918 K8Z20_RS28080 WP_000470745.1 5384327..5385454(+) (recF) [Bacillus thuringiensis strain ABTS-1857]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=604918 K8Z20_RS28080 WP_000470745.1 5384327..5385454(+) (recF) [Bacillus thuringiensis strain ABTS-1857]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653