Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K8Z20_RS20670 Genome accession   NZ_CP083156
Coordinates   4010408..4011451 (-) Length   347 a.a.
NCBI ID   WP_001013180.1    Uniprot ID   A0A9X5WLU9
Organism   Bacillus thuringiensis strain ABTS-1857     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4005408..4016451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z20_RS20635 (K8Z20_20400) - 4006310..4006654 (+) 345 WP_021727635.1 helix-turn-helix transcriptional regulator -
  K8Z20_RS20640 (K8Z20_20405) - 4006857..4008026 (+) 1170 WP_021727636.1 site-specific integrase -
  K8Z20_RS20645 (K8Z20_20410) - 4008174..4008356 (-) 183 Protein_4079 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K8Z20_RS20650 (K8Z20_20415) - 4008326..4008628 (-) 303 WP_000829473.1 hypothetical protein -
  K8Z20_RS20655 (K8Z20_20420) comGD 4008621..4009076 (-) 456 WP_000813142.1 competence type IV pilus minor pilin ComGD -
  K8Z20_RS20660 (K8Z20_20425) comGC 4009073..4009372 (-) 300 WP_001178686.1 competence type IV pilus major pilin ComGC -
  K8Z20_RS20665 (K8Z20_20430) comGB 4009384..4010415 (-) 1032 WP_000475193.1 competence type IV pilus assembly protein ComGB -
  K8Z20_RS20670 (K8Z20_20435) comGA 4010408..4011451 (-) 1044 WP_001013180.1 competence type IV pilus ATPase ComGA Machinery gene
  K8Z20_RS20675 (K8Z20_20440) - 4011657..4012352 (+) 696 WP_000434125.1 helix-turn-helix domain-containing protein -
  K8Z20_RS20680 (K8Z20_20445) - 4012478..4012720 (+) 243 WP_000440721.1 DUF2626 domain-containing protein -
  K8Z20_RS20685 (K8Z20_20450) - 4012827..4014221 (+) 1395 WP_001094330.1 L-cystine transporter -
  K8Z20_RS20690 (K8Z20_20455) - 4014301..4014693 (-) 393 WP_000875388.1 hypothetical protein -
  K8Z20_RS20695 (K8Z20_20460) - 4014781..4014996 (-) 216 WP_001008326.1 DUF3912 family protein -
  K8Z20_RS20700 (K8Z20_20465) - 4015249..4015560 (+) 312 WP_001093237.1 hypothetical protein -
  K8Z20_RS20705 (K8Z20_20470) - 4015595..4016083 (-) 489 WP_000764261.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39157.52 Da        Isoelectric Point: 8.5482

>NTDB_id=604900 K8Z20_RS20670 WP_001013180.1 4010408..4011451(-) (comGA) [Bacillus thuringiensis strain ABTS-1857]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRIGKDLMTRQCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGHELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEEDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=604900 K8Z20_RS20670 WP_001013180.1 4010408..4011451(-) (comGA) [Bacillus thuringiensis strain ABTS-1857]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCAGTGCAACTACGTATAGGAAAAGATTTAATGACGAGACAGTGTATTGAAAAGGAGTTTGGAG
AAAAACTCGTTTCACATTTCAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTTCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGTTACTCGTGTTTACTGGACCGACTGGATCTGGGAAGACGACGACAATGTATGCATTATTAGAAGTA
ATTAGAAAAAAGAAAACACGTCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGGGATGAGGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTAATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTACTATATGGACATGAGTTAAAACAAGCACTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATACGAAAAGGATATGCTTTAGGTTTTTTAGAAGAAGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.908

100

0.559