Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   NLY35_RS10530 Genome accession   NZ_CP100418
Coordinates   2103717..2104166 (-) Length   149 a.a.
NCBI ID   WP_012027921.1    Uniprot ID   G9CHX9
Organism   Streptococcus suis strain STC104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2098717..2109166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS10510 (NLY35_10510) - 2099152..2099683 (-) 532 Protein_2036 histidine phosphatase family protein -
  NLY35_RS10515 (NLY35_10515) - 2099688..2100131 (-) 444 WP_074390173.1 dUTP diphosphatase -
  NLY35_RS10520 (NLY35_10520) rcrQ 2100233..2102017 (-) 1785 WP_024417148.1 ABC transporter ATP-binding protein Regulator
  NLY35_RS10525 (NLY35_10525) - 2102018..2103724 (-) 1707 WP_172001149.1 ABC transporter ATP-binding protein -
  NLY35_RS10530 (NLY35_10530) rcrR 2103717..2104166 (-) 450 WP_012027921.1 MarR family transcriptional regulator Regulator
  NLY35_RS10535 (NLY35_10535) - 2104388..2105404 (+) 1017 WP_024381196.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  NLY35_RS10540 (NLY35_10540) galU 2105449..2106348 (+) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NLY35_RS10545 (NLY35_10545) - 2106366..2107043 (-) 678 WP_172001148.1 rhomboid family intramembrane serine protease -
  NLY35_RS10550 (NLY35_10550) - 2107027..2107569 (-) 543 WP_024381198.1 5-formyltetrahydrofolate cyclo-ligase -
  NLY35_RS10555 (NLY35_10555) - 2107610..2108737 (-) 1128 WP_024381199.1 N-acetyldiaminopimelate deacetylase -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17284.90 Da        Isoelectric Point: 8.9142

>NTDB_id=604863 NLY35_RS10530 WP_012027921.1 2103717..2104166(-) (rcrR) [Streptococcus suis strain STC104]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEAETFVKDIEAELKISKSVASNLVKRMEKNGFIQ
VLPSKVDKRFKQLVLTEKGQGKICHLKAFHEEMHHSLFWGIQKEDFDLVKQVGNQLKVNIQRYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=604863 NLY35_RS10530 WP_012027921.1 2103717..2104166(-) (rcrR) [Streptococcus suis strain STC104]
ATGGGACATACTATTGCAGATTTTCGGAACTTGCTCAATCAGATTGAACAAATTAGTGAAACCATTGCAAAAGAATACGA
TGTGGAGCACTTGGCTGGTCCACAGGGCTGGGCCTTGCGCTTCATTGCGGAACGGTCGGAAGCCGAAACCTTTGTAAAAG
ATATAGAAGCGGAATTAAAGATTTCCAAATCGGTTGCCAGCAATCTGGTCAAGAGAATGGAGAAAAATGGCTTTATCCAA
GTCCTTCCCTCTAAGGTTGACAAACGCTTCAAACAGCTGGTTTTGACAGAGAAGGGACAAGGGAAGATATGTCACCTGAA
AGCTTTTCATGAAGAAATGCACCATTCACTTTTTTGGGGCATTCAAAAAGAGGACTTTGACTTGGTTAAACAGGTGGGCA
ATCAATTAAAAGTAAATATTCAACGCTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9CHX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.662

95.302

0.416