Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NLY35_RS08590 Genome accession   NZ_CP100418
Coordinates   1708791..1710452 (-) Length   553 a.a.
NCBI ID   WP_254369356.1    Uniprot ID   -
Organism   Streptococcus suis strain STC104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1703791..1715452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLY35_RS08560 (NLY35_08560) - 1703810..1705096 (+) 1287 WP_024394995.1 hydroxymethylglutaryl-CoA reductase, degradative -
  NLY35_RS08565 (NLY35_08565) - 1705236..1705703 (-) 468 WP_024394994.1 GNAT family N-acetyltransferase -
  NLY35_RS08570 (NLY35_08570) - 1706105..1706380 (-) 276 WP_002936247.1 HU family DNA-binding protein -
  NLY35_RS08575 (NLY35_08575) - 1706470..1707066 (-) 597 WP_002936249.1 YpmS family protein -
  NLY35_RS08580 (NLY35_08580) - 1707038..1707871 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  NLY35_RS08585 (NLY35_08585) - 1707864..1708697 (-) 834 WP_024394992.1 DegV family protein -
  NLY35_RS08590 (NLY35_08590) recN 1708791..1710452 (-) 1662 WP_254369356.1 DNA repair protein RecN Machinery gene
  NLY35_RS08595 (NLY35_08595) - 1710455..1710880 (-) 426 WP_002936261.1 arginine repressor -
  NLY35_RS08600 (NLY35_08600) - 1710873..1711694 (-) 822 WP_204101604.1 TlyA family RNA methyltransferase -
  NLY35_RS08605 (NLY35_08605) - 1711687..1712556 (-) 870 WP_201343678.1 polyprenyl synthetase family protein -
  NLY35_RS08610 (NLY35_08610) - 1712556..1712771 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  NLY35_RS08615 (NLY35_08615) xseA 1712746..1714089 (-) 1344 WP_024417708.1 exodeoxyribonuclease VII large subunit -
  NLY35_RS08620 (NLY35_08620) - 1714256..1715164 (+) 909 WP_012775292.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62746.95 Da        Isoelectric Point: 4.6799

>NTDB_id=604846 NLY35_RS08590 WP_254369356.1 1708791..1710452(-) (recN) [Streptococcus suis strain STC104]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVNNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=604846 NLY35_RS08590 WP_254369356.1 1708791..1710452(-) (recN) [Streptococcus suis strain STC104]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCAATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATTTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.509

100

0.448