Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K8Z23_RS25925 Genome accession   NZ_CP083129
Coordinates   5011754..5012881 (-) Length   375 a.a.
NCBI ID   WP_000470754.1    Uniprot ID   A0A9W3P6A6
Organism   Bacillus thuringiensis strain NB-176     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5006754..5017881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z23_RS25915 (K8Z23_25870) gyrA 5007232..5009703 (-) 2472 WP_001282868.1 DNA gyrase subunit A -
  K8Z23_RS25920 (K8Z23_25875) gyrB 5009792..5011714 (-) 1923 WP_000435979.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K8Z23_RS25925 (K8Z23_25880) recF 5011754..5012881 (-) 1128 WP_000470754.1 DNA replication/repair protein RecF Machinery gene
  K8Z23_RS25930 (K8Z23_25885) yaaA 5012894..5013106 (-) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  K8Z23_RS25935 (K8Z23_25890) dnaN 5013234..5014379 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  K8Z23_RS25940 (K8Z23_25895) dnaA 5014558..5015898 (-) 1341 WP_000428018.1 chromosomal replication initiator protein DnaA -
  K8Z23_RS25945 (K8Z23_25900) rpmH 5016463..5016597 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  K8Z23_RS25950 (K8Z23_25905) rnpA 5016674..5017021 (+) 348 WP_000726621.1 ribonuclease P protein component -
  K8Z23_RS25955 (K8Z23_25910) spoIIIJ 5017074..5017841 (+) 768 WP_000727741.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43318.66 Da        Isoelectric Point: 6.7809

>NTDB_id=604755 K8Z23_RS25925 WP_000470754.1 5011754..5012881(-) (recF) [Bacillus thuringiensis strain NB-176]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=604755 K8Z23_RS25925 WP_000470754.1 5011754..5012881(-) (recF) [Bacillus thuringiensis strain NB-176]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTATATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGGCAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGCTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.033

98.133

0.648