Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K8Z23_RS20000 Genome accession   NZ_CP083129
Coordinates   3886177..3886500 (+) Length   107 a.a.
NCBI ID   WP_000578875.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain NB-176     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3881177..3891500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z23_RS19985 (K8Z23_19955) - 3881694..3883061 (-) 1368 WP_000028385.1 aldehyde dehydrogenase -
  K8Z23_RS19990 (K8Z23_19960) inhA1 3883233..3885620 (-) 2388 WP_001035950.1 M6 family metalloprotease immune inhibitor InhA1 -
  K8Z23_RS19995 (K8Z23_19965) - 3885963..3886097 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  K8Z23_RS20000 (K8Z23_19970) sinR 3886177..3886500 (+) 324 WP_000578875.1 helix-turn-helix domain-containing protein Regulator
  K8Z23_RS20005 (K8Z23_19975) calY 3886573..3887166 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  K8Z23_RS20010 (K8Z23_19980) - 3887555..3888343 (-) 789 WP_016077956.1 DUF4047 domain-containing protein -
  K8Z23_RS20015 (K8Z23_19985) - 3888478..3889065 (-) 588 WP_000172852.1 CalY family protein -
  K8Z23_RS20020 (K8Z23_19990) sipW 3889126..3889695 (-) 570 WP_000767804.1 signal peptidase I SipW -
  K8Z23_RS20025 (K8Z23_19995) - 3889890..3891176 (-) 1287 WP_000247025.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12291.16 Da        Isoelectric Point: 9.9745

>NTDB_id=604740 K8Z23_RS20000 WP_000578875.1 3886177..3886500(+) (sinR) [Bacillus thuringiensis strain NB-176]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKATNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=604740 K8Z23_RS20000 WP_000578875.1 3886177..3886500(+) (sinR) [Bacillus thuringiensis strain NB-176]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGCAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692