Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8Z23_RS16480 Genome accession   NZ_CP083129
Coordinates   3216399..3216686 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain NB-176     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3211399..3221686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z23_RS16445 (K8Z23_16420) - 3211432..3211959 (-) 528 WP_016077838.1 DinB family protein -
  K8Z23_RS16450 (K8Z23_16425) - 3212156..3212503 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  K8Z23_RS16455 (K8Z23_16430) - 3212588..3212812 (+) 225 WP_000162602.1 hypothetical protein -
  K8Z23_RS16460 (K8Z23_16435) - 3213132..3213770 (-) 639 Protein_3271 MFS transporter -
  K8Z23_RS16465 (K8Z23_16440) - 3213786..3214721 (-) 936 WP_000877950.1 aldo/keto reductase -
  K8Z23_RS16470 (K8Z23_16445) - 3214828..3215136 (+) 309 WP_001259903.1 ArsR/SmtB family transcription factor -
  K8Z23_RS16475 (K8Z23_16450) - 3215176..3216123 (-) 948 WP_000099758.1 serine protease -
  K8Z23_RS16480 (K8Z23_16455) abrB 3216399..3216686 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8Z23_RS16485 (K8Z23_16460) - 3216802..3218682 (-) 1881 WP_001025981.1 ABC transporter permease -
  K8Z23_RS16490 (K8Z23_16465) nadE 3218957..3219775 (+) 819 WP_000174897.1 ammonia-dependent NAD(+) synthetase -
  K8Z23_RS16495 (K8Z23_16470) - 3219818..3220279 (-) 462 WP_000024996.1 NUDIX hydrolase -
  K8Z23_RS16500 (K8Z23_16475) - 3220308..3220505 (-) 198 WP_042597862.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=604737 K8Z23_RS16480 WP_000648324.1 3216399..3216686(-) (abrB) [Bacillus thuringiensis strain NB-176]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=604737 K8Z23_RS16480 WP_000648324.1 3216399..3216686(-) (abrB) [Bacillus thuringiensis strain NB-176]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTGCAAAAATATCAACCTTATAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526