Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K8Z41_RS18405 Genome accession   NZ_CP083116
Coordinates   3601636..3601959 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain SA11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3596636..3606959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z41_RS18390 (K8Z41_18355) - 3597150..3598517 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  K8Z41_RS18395 (K8Z41_18360) inhA1 3598689..3601079 (-) 2391 WP_001035947.1 M6 family metalloprotease immune inhibitor InhA1 -
  K8Z41_RS18400 (K8Z41_18365) - 3601422..3601556 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  K8Z41_RS18405 (K8Z41_18370) sinR 3601636..3601959 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  K8Z41_RS18410 (K8Z41_18375) calY 3602033..3602626 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  K8Z41_RS18415 (K8Z41_18380) - 3603014..3603892 (-) 879 WP_228410181.1 DUF4047 domain-containing protein -
  K8Z41_RS18420 (K8Z41_18385) - 3604027..3604614 (-) 588 WP_000172854.1 CalY family protein -
  K8Z41_RS18425 (K8Z41_18390) - 3604675..3605244 (-) 570 WP_000767792.1 signal peptidase I -
  K8Z41_RS18430 (K8Z41_18395) - 3605436..3606722 (-) 1287 WP_000247031.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=604688 K8Z41_RS18405 WP_000578885.1 3601636..3601959(+) (sinR) [Bacillus thuringiensis strain SA11]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=604688 K8Z41_RS18405 WP_000578885.1 3601636..3601959(+) (sinR) [Bacillus thuringiensis strain SA11]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692