Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   K8Z42_RS27840 Genome accession   NZ_CP083101
Coordinates   5392774..5394123 (+) Length   449 a.a.
NCBI ID   WP_000879427.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain ABTS-351     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5387774..5399123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z42_RS27820 (K8Z42_27800) - 5388884..5389519 (-) 636 WP_000926665.1 YigZ family protein -
  K8Z42_RS27825 (K8Z42_27805) - 5389756..5390598 (+) 843 WP_002101558.1 DegV family protein -
  K8Z42_RS27830 (K8Z42_27810) - 5390771..5391085 (+) 315 WP_000400857.1 helix-turn-helix domain-containing protein -
  K8Z42_RS27835 (K8Z42_27815) - 5391234..5392646 (+) 1413 WP_000499473.1 C40 family peptidase -
  K8Z42_RS27840 (K8Z42_27820) comFA 5392774..5394123 (+) 1350 WP_000879427.1 ATP-dependent helicase ComFA Machinery gene
  K8Z42_RS27845 (K8Z42_27825) - 5394123..5394827 (+) 705 WP_016100030.1 ComF family protein -
  K8Z42_RS27850 (K8Z42_27830) cspC 5394954..5395151 (+) 198 WP_001990088.1 cold shock protein CspC -
  K8Z42_RS27855 (K8Z42_27835) raiA 5395474..5396016 (+) 543 WP_000671186.1 ribosome-associated translation inhibitor RaiA -
  K8Z42_RS27860 (K8Z42_27840) - 5396421..5396894 (+) 474 WP_000511547.1 hypothetical protein -
  K8Z42_RS27865 (K8Z42_27845) - 5397012..5397581 (+) 570 WP_001211058.1 hypothetical protein -
  K8Z42_RS27870 (K8Z42_27850) - 5397609..5398397 (+) 789 WP_000120048.1 hypothetical protein -
  K8Z42_RS27875 (K8Z42_27855) - 5398384..5399079 (+) 696 WP_000466508.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51000.91 Da        Isoelectric Point: 9.9654

>NTDB_id=604662 K8Z42_RS27840 WP_000879427.1 5392774..5394123(+) (comFA) [Bacillus thuringiensis strain ABTS-351]
MLAGKQLLLEELSSDLQRELNDLKKKGEIVCVQGVKKKNSKYMCQRCGNVDRRLFASFLCKRCSKVCAYCRKCITMGRVS
ECAVLVRGIAERKREKNSNLLQWNGTLSTGQNLAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGINEALQKGERVCIAT
PRTDVVLELAPRLQEVFPYIKVAALYGGSVDKEKDAVLVVATTHQLLRYYRAFHVMVVDEIDAFPYCADQMLQYAVKQAM
KEKAARIYLTATPDETWKRKLKQGKQKGVIVSGRYHRHPLPVPLFCWCGNWKKNLIHKRIPRVLLQWLQTYLNKKFPIFL
FVPHVRYIEEISLLLKPLNNRIEGVHAEDPGRKEKVAAFKKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEMFSESALV
QIAGRAGRSFEAPYGEVIYFHYGKTEAMVRAKKHIQGMNKNAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=604662 K8Z42_RS27840 WP_000879427.1 5392774..5394123(+) (comFA) [Bacillus thuringiensis strain ABTS-351]
ATGCTAGCGGGGAAACAGTTGCTATTAGAAGAACTTTCTTCAGATTTACAGAGGGAATTAAACGATTTGAAAAAGAAGGG
AGAGATCGTATGTGTACAAGGTGTAAAAAAGAAGAATTCTAAATATATGTGCCAACGCTGCGGAAATGTAGATCGGCGGC
TATTTGCGTCGTTTTTATGTAAAAGGTGCAGTAAAGTGTGCGCATATTGCCGGAAGTGTATAACGATGGGGAGAGTAAGT
GAATGTGCTGTACTTGTTCGCGGGATTGCTGAAAGAAAGAGAGAAAAGAATTCAAATTTGTTACAGTGGAACGGGACGTT
GTCTACTGGCCAGAATTTGGCGGCGCAAGGAGTTATAGAGGCTATTAAGCAAAAAGAATCATTTTTTATTTGGGCTGTAT
GCGGGGCTGGGAAAACAGAGATGTTGTTTTACGGAATTAACGAAGCGCTTCAAAAAGGAGAAAGAGTTTGTATCGCAACG
CCGAGAACGGATGTTGTTCTGGAATTAGCACCGAGATTGCAAGAAGTATTTCCATATATAAAGGTAGCGGCTTTATATGG
AGGGAGTGTGGATAAAGAAAAAGATGCAGTACTAGTCGTTGCGACTACGCATCAATTATTACGTTATTATAGGGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCGTTTCCATATTGTGCAGATCAAATGTTACAGTACGCGGTAAAACAAGCGATG
AAAGAAAAAGCGGCGCGTATTTATTTAACTGCGACTCCAGATGAAACGTGGAAGCGAAAACTTAAACAAGGTAAACAAAA
AGGTGTTATTGTTTCTGGACGATATCATCGTCATCCTTTGCCAGTTCCTTTATTTTGTTGGTGCGGGAATTGGAAAAAAA
ACCTCATTCATAAAAGAATTCCTCGAGTTTTACTACAGTGGTTACAAACATACTTAAATAAAAAATTCCCTATTTTTTTA
TTCGTCCCCCATGTGCGATATATAGAAGAAATAAGCTTGTTGTTAAAACCATTAAACAATCGAATTGAAGGTGTACATGC
AGAAGATCCAGGGAGAAAAGAAAAAGTAGCGGCTTTCAAAAAGGGAGAAATCCCATTATTAGTTACAACGACAATTTTAG
AGCGAGGCGTAACGGTGAAAAATTTGCAAGTCGCAGTTTTGGGGGCGGAAGAAGAAATGTTTTCAGAAAGTGCGCTCGTA
CAAATTGCGGGCCGAGCAGGGCGGAGCTTTGAAGCACCGTATGGAGAGGTCATTTATTTTCACTATGGCAAGACAGAGGC
GATGGTGCGCGCGAAAAAACATATTCAAGGTATGAATAAAAATGCGAAAGAACAAGGATTGATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(313-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

50.905

98.441

0.501
  comFA Latilactobacillus sakei subsp. sakei 23K

41.191

89.755

0.37