Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K8Z39_RS24485 Genome accession   NZ_CP083085
Coordinates   4634980..4635303 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain B401     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4629980..4640303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z39_RS24470 (K8Z39_24415) - 4630494..4631861 (-) 1368 WP_000028382.1 aldehyde dehydrogenase -
  K8Z39_RS24475 (K8Z39_24420) inhA1 4632033..4634423 (-) 2391 WP_001035947.1 M6 family metalloprotease immune inhibitor InhA1 -
  K8Z39_RS24480 (K8Z39_24425) - 4634766..4634900 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  K8Z39_RS24485 (K8Z39_24430) sinR 4634980..4635303 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  K8Z39_RS24490 (K8Z39_24435) calY 4635377..4635970 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  K8Z39_RS24495 (K8Z39_24440) - 4636358..4637200 (-) 843 WP_021727726.1 DUF4047 domain-containing protein -
  K8Z39_RS24500 (K8Z39_24445) - 4637335..4637922 (-) 588 WP_228225066.1 CalY family protein -
  K8Z39_RS24505 (K8Z39_24450) - 4637983..4638552 (-) 570 WP_000767792.1 signal peptidase I -
  K8Z39_RS24510 (K8Z39_24455) - 4638744..4640030 (-) 1287 WP_021727727.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=604597 K8Z39_RS24485 WP_000578885.1 4634980..4635303(+) (sinR) [Bacillus thuringiensis strain B401]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=604597 K8Z39_RS24485 WP_000578885.1 4634980..4635303(+) (sinR) [Bacillus thuringiensis strain B401]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692