Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   K8Z39_RS01630 Genome accession   NZ_CP083085
Coordinates   267922..269049 (-) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus thuringiensis strain B401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 262922..274049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z39_RS01620 (K8Z39_01615) gyrA 263401..265872 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  K8Z39_RS01625 (K8Z39_01620) gyrB 265961..267883 (-) 1923 WP_021727685.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  K8Z39_RS01630 (K8Z39_01625) recF 267922..269049 (-) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  K8Z39_RS01635 (K8Z39_01630) yaaA 269062..269274 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  K8Z39_RS01640 (K8Z39_01635) dnaN 269402..270547 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  K8Z39_RS01645 (K8Z39_01640) dnaA 270727..272067 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  K8Z39_RS01650 (K8Z39_01645) rpmH 272632..272766 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  K8Z39_RS01655 (K8Z39_01650) rnpA 272843..273190 (+) 348 WP_000726621.1 ribonuclease P protein component -
  K8Z39_RS01660 (K8Z39_01655) spoIIIJ 273243..274010 (+) 768 WP_000727737.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=604561 K8Z39_RS01630 WP_000470745.1 267922..269049(-) (recF) [Bacillus thuringiensis strain B401]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=604561 K8Z39_RS01630 WP_000470745.1 267922..269049(-) (recF) [Bacillus thuringiensis strain B401]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAGGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653