Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   NKZ67_RS04940 Genome accession   NZ_CP100334
Coordinates   971236..971901 (-) Length   221 a.a.
NCBI ID   WP_024405695.1    Uniprot ID   -
Organism   Streptococcus suis strain STC83     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 966236..976901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ67_RS04925 (NKZ67_04925) xerS 967574..968644 (+) 1071 WP_014636926.1 tyrosine recombinase XerS Machinery gene
  NKZ67_RS04930 (NKZ67_04930) - 968714..970222 (-) 1509 WP_172001163.1 phosphomannomutase/phosphoglucomutase -
  NKZ67_RS04935 (NKZ67_04935) - 970298..971239 (-) 942 WP_024417207.1 sensor histidine kinase -
  NKZ67_RS04940 (NKZ67_04940) braR 971236..971901 (-) 666 WP_024405695.1 response regulator transcription factor Regulator
  NKZ67_RS04945 (NKZ67_04945) - 971943..972209 (-) 267 WP_024405694.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NKZ67_RS04950 (NKZ67_04950) relB 972193..972444 (-) 252 WP_024417206.1 type II toxin-antitoxin system RelB family antitoxin -
  NKZ67_RS04955 (NKZ67_04955) - 972536..974506 (-) 1971 WP_024417205.1 ABC transporter permease -
  NKZ67_RS04960 (NKZ67_04960) - 974507..975259 (-) 753 WP_015646831.1 ABC transporter ATP-binding protein -
  NKZ67_RS04965 (NKZ67_04965) - 975280..975657 (-) 378 WP_011922413.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  NKZ67_RS04970 (NKZ67_04970) - 975670..975810 (-) 141 WP_012775106.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25433.19 Da        Isoelectric Point: 4.7792

>NTDB_id=604420 NKZ67_RS04940 WP_024405695.1 971236..971901(-) (braR) [Streptococcus suis strain STC83]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDINLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=604420 NKZ67_RS04940 WP_024405695.1 971236..971901(-) (braR) [Streptococcus suis strain STC83]
ATGAAAAAAGAAAAGATTTATATTGTTGAAGATGATGAGATGATTGTCCAGCTCTTGAAGCAGCATTTGGGAAAATCTTA
TCAGGTAGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAAGTTGCGGAAATCAAACCAGACTTAGTGCTGATGGACA
TTAACTTGCCCTATTACAACGGTTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCAATTATCTTTATCTCC
TCTAGCGATGATGAGATGAATGCGGTCATGGCCATGAACATGGGTGGCGATGATTTTGTTTCTAAGCCATTTTCTCTAGG
AATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTAGGGTTAATCAATTCAGCAAATCAACCGATTTGTCTATCGACCAAT
TCCAGCTTAGTTTGGACGGACGATTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAGATTTTGTCC
GCCTTACTAGAAAGACAAGGGCAGATTGTCAGCAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAACACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAAGTCGGGTTTGAACGAATTCATACGGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)

Response regulator receiver domain (Response_reg)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475