Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NKZ80_RS10580 Genome accession   NZ_CP100330
Coordinates   2111804..2113774 (-) Length   656 a.a.
NCBI ID   WP_024417144.1    Uniprot ID   -
Organism   Streptococcus suis strain STC85     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106804..2118774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS10550 (NKZ80_10550) - 2107116..2107649 (-) 534 WP_013730635.1 hypothetical protein -
  NKZ80_RS10555 (NKZ80_10555) - 2107964..2108692 (-) 729 WP_013730636.1 metallophosphoesterase -
  NKZ80_RS10560 (NKZ80_10560) - 2108758..2110107 (-) 1350 WP_002939907.1 glucose-6-phosphate isomerase -
  NKZ80_RS10565 (NKZ80_10565) - 2110189..2110731 (-) 543 WP_024417145.1 hypothetical protein -
  NKZ80_RS10575 (NKZ80_10575) tadA 2111002..2111523 (-) 522 WP_012027934.1 tRNA adenosine(34) deaminase TadA -
  NKZ80_RS10580 (NKZ80_10580) recP/tkt 2111804..2113774 (-) 1971 WP_024417144.1 transketolase Machinery gene
  NKZ80_RS10585 (NKZ80_10585) ulaG 2113986..2115077 (-) 1092 WP_002938500.1 L-ascorbate 6-phosphate lactonase -
  NKZ80_RS10590 (NKZ80_10590) - 2115187..2116875 (-) 1689 WP_004194414.1 transcription antiterminator -
  NKZ80_RS10595 (NKZ80_10595) - 2117000..2117617 (-) 618 WP_004194416.1 hypothetical protein -
  NKZ80_RS10600 (NKZ80_10600) - 2117702..2118418 (-) 717 WP_024417142.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 70760.63 Da        Isoelectric Point: 4.7793

>NTDB_id=604264 NKZ80_RS10580 WP_024417144.1 2111804..2113774(-) (recP/tkt) [Streptococcus suis strain STC85]
MSNLSVNAIRFLGIDAIEKSKSGHPGVVMGAAPMAYSLFTKELRINPAQPNWVNRDRFILSAGHGSMLLYGLLHLSGFED
VTMDEIKNFRQWGSKTPGHPEFGHTAGVDATTGPLGQGISTATGFAQAERFLAAKYNRDGFPIFDHYTYVICGDGDLMEG
VSAEAASYAGLQKLEKLIVLYDSNDINLDGETKDSFTEDVRARYNAYGWHTDLVTDGTDVDAIFAAIEKAKVAGKPSLIE
IKTVIGHGSPNKQGTNAVHGAPLGAEETEATRKALDWNYGPFEIPAEVYADFKANVADRGAAAYDAWVKLVEDYKVAHPE
LAAEVTAILEGRDVVEIKPEDFPVYENGFSQATRNSSQDALNAAAKVLPTFLGGSADLAHSNMTYIKEDGLQDSVNPLNR
NIQFGVREFAMGTILNGMAAHGGLRVYGGTFFVFSDYVKAAVRLSALQGLPVTYVFTHDSIAVGEDGPTHEPIEHLAGLR
AMPNLNVFRPADARETQAAWYLSLTSKSTPSALILTRQNLTVEEGTDFDKVAKGAYVVYEAAGFDTILLASGSEVNLAVK
AAKELEAAGTKVRVVSVPSTELFDAQDAAYKEEILPNAIRRRLAIEMGATQSWYKYVGLDGKVLGIDTFGASAPAQTVID
NYGFTVENVVKLVGEL

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=604264 NKZ80_RS10580 WP_024417144.1 2111804..2113774(-) (recP/tkt) [Streptococcus suis strain STC85]
ATGTCAAATCTTTCAGTCAATGCGATTCGTTTCCTTGGTATTGATGCCATCGAAAAATCAAAATCAGGTCACCCAGGTGT
CGTCATGGGTGCGGCTCCAATGGCCTACAGCCTTTTTACTAAAGAACTTCGTATCAACCCAGCTCAGCCAAACTGGGTGA
ACCGTGACCGCTTTATCTTATCAGCAGGTCATGGGTCAATGTTGCTTTACGGACTTCTTCACCTTTCAGGTTTTGAAGAT
GTCACTATGGATGAAATCAAGAACTTCCGTCAGTGGGGTTCAAAAACACCAGGTCACCCAGAATTTGGTCACACAGCTGG
TGTAGATGCGACAACAGGTCCTCTTGGACAAGGTATCTCAACTGCAACAGGTTTTGCGCAAGCAGAGCGTTTCCTTGCAG
CTAAGTACAACCGCGATGGTTTCCCAATCTTTGACCACTATACCTACGTAATCTGTGGTGATGGCGACTTGATGGAAGGT
GTTTCTGCAGAAGCGGCTTCTTACGCAGGTCTTCAAAAATTAGAAAAACTCATCGTTCTTTACGATTCAAATGACATCAA
CTTGGATGGCGAAACAAAAGACTCCTTCACAGAAGATGTACGTGCCCGTTACAATGCTTATGGCTGGCATACAGACCTCG
TAACAGACGGTACAGATGTAGATGCCATCTTTGCTGCTATTGAAAAGGCAAAAGTAGCTGGTAAGCCATCTCTTATCGAA
ATCAAGACTGTTATCGGTCATGGTTCGCCAAACAAACAAGGTACAAATGCCGTTCACGGTGCTCCACTTGGTGCAGAAGA
AACAGAAGCAACTCGTAAGGCGCTTGATTGGAACTATGGTCCATTTGAAATTCCAGCTGAAGTCTATGCGGACTTCAAAG
CTAATGTAGCTGATCGCGGTGCAGCAGCCTACGATGCTTGGGTGAAATTAGTTGAAGACTACAAAGTAGCTCATCCAGAA
TTGGCTGCAGAAGTAACAGCTATCTTGGAAGGTCGTGATGTAGTCGAAATCAAGCCAGAAGACTTCCCAGTTTATGAAAA
TGGCTTCTCACAAGCAACTCGTAACTCATCACAAGATGCGCTCAACGCAGCGGCTAAAGTATTGCCAACCTTCCTTGGAG
GTTCAGCTGACTTGGCTCACTCAAACATGACCTATATCAAGGAAGATGGTTTGCAAGATTCAGTAAATCCACTCAACCGC
AATATCCAGTTCGGTGTGCGTGAATTTGCCATGGGAACTATCTTGAATGGTATGGCAGCCCACGGCGGACTTCGTGTCTA
TGGTGGTACCTTCTTCGTCTTCTCAGACTATGTGAAGGCAGCTGTTCGTTTGTCAGCCCTTCAAGGACTTCCTGTGACTT
ACGTCTTCACACACGACTCTATCGCAGTTGGTGAAGATGGACCAACTCACGAGCCAATTGAGCACTTGGCAGGACTTCGT
GCTATGCCAAACCTCAATGTCTTCCGCCCAGCAGATGCGCGTGAAACACAGGCAGCTTGGTACTTGTCATTGACTAGCAA
GTCTACACCATCAGCCCTTATTCTCACTCGTCAAAACTTGACAGTTGAAGAAGGAACAGACTTTGACAAGGTTGCAAAAG
GGGCTTATGTTGTCTATGAAGCAGCAGGCTTTGATACAATCCTTCTTGCATCTGGTTCAGAAGTGAACTTGGCTGTTAAA
GCTGCCAAAGAACTAGAAGCAGCAGGCACTAAGGTTCGTGTGGTTTCTGTGCCATCAACTGAACTCTTCGATGCACAAGA
TGCTGCCTACAAGGAAGAAATCCTACCAAATGCCATCCGCCGTCGCTTGGCAATTGAAATGGGTGCAACTCAAAGTTGGT
ACAAGTATGTCGGTCTGGACGGTAAAGTCCTTGGTATCGACACATTCGGTGCCTCAGCTCCAGCCCAAACAGTTATTGAC
AACTACGGCTTCACAGTAGAAAATGTTGTGAAATTAGTTGGCGAATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(537-649)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-521)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(3-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

81.098

100

0.811