Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NKZ80_RS02095 Genome accession   NZ_CP100330
Coordinates   405026..405643 (-) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain STC85     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 400026..410643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NKZ80_RS02075 (NKZ80_02075) - 400713..401546 (+) 834 WP_024417380.1 energy-coupling factor transporter transmembrane protein EcfT -
  NKZ80_RS02080 (NKZ80_02080) - 401706..401906 (+) 201 WP_024417379.1 cold-shock protein -
  NKZ80_RS02085 (NKZ80_02085) rsmG 402099..402812 (-) 714 WP_024377206.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  NKZ80_RS02090 (NKZ80_02090) pbp1a 402871..405045 (-) 2175 WP_024417378.1 penicillin-binding protein PBP1A -
  NKZ80_RS02095 (NKZ80_02095) recU 405026..405643 (-) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  NKZ80_RS02100 (NKZ80_02100) - 405709..406248 (+) 540 WP_029174574.1 DUF1273 domain-containing protein -
  NKZ80_RS02105 (NKZ80_02105) gpsB 406316..406651 (+) 336 WP_004194167.1 cell division regulator GpsB -
  NKZ80_RS02115 (NKZ80_02115) - 407207..408373 (+) 1167 WP_024394809.1 class I SAM-dependent RNA methyltransferase -
  NKZ80_RS02120 (NKZ80_02120) - 408383..409837 (+) 1455 WP_024394810.1 cell division site-positioning protein MapZ family protein -
  NKZ80_RS02125 (NKZ80_02125) - 410058..410540 (-) 483 WP_004194159.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=604200 NKZ80_RS02095 WP_004194173.1 405026..405643(-) (recU) [Streptococcus suis strain STC85]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=604200 NKZ80_RS02095 WP_004194173.1 405026..405643(-) (recU) [Streptococcus suis strain STC85]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473