Detailed information NTG0060404

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: DAECLI1_RS23380
• Genome accession: NZ_AP018784
• Coordinates: 4773955..4774980 (+)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain SK1144
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 4768955..4779980

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DAECLI1_RS23360 (DAECLI1_44660)	metJ	4770140..4770457 (+)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-
DAECLI1_RS23365 (DAECLI1_44670)	yiiX	4770517..4771125 (+)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
DAECLI1_RS23370 (DAECLI1_44680)	rpmE	4771186..4771398 (-)	213	WP_000710769.1	50S ribosomal protein L31	-
DAECLI1_RS23375 (DAECLI1_44690)	priA	4771601..4773799 (+)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
DAECLI1_RS23380 (DAECLI1_44700)	cytR	4773955..4774980 (+)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
DAECLI1_RS23385 (DAECLI1_44710)	ftsN	4775072..4776031 (+)	960	WP_000068834.1	cell division protein FtsN	-
DAECLI1_RS23390 (DAECLI1_44720)	hslV	4776124..4776654 (+)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
DAECLI1_RS23395 (DAECLI1_44730)	hslU	4776664..4777995 (+)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
DAECLI1_RS23400 (DAECLI1_44740)	menA	4778062..4778988 (+)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
DAECLI1_RS23405 (DAECLI1_44750)	rraA	4779081..4779566 (+)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
DAECLI1_RS23410 (DAECLI1_44760)	zapB	4779651..4779896 (-)	246	WP_001296623.1	septal ring assembly protein ZapB	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=60404 DAECLI1_RS23380 WP_000644908.1 4773955..4774980(+) (cytR) [Escherichia coli strain SK1144]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=60404 DAECLI1_RS23380 WP_000644908.1 4773955..4774980(+) (cytR) [Escherichia coli strain SK1144]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625