Detailed information
Bioinformatically predicted
Overview
| Name | comYE | Type | Machinery gene |
| Locus tag | K8227_RS00775 | Genome accession | NZ_CP082948 |
| Coordinates | 122164..122457 (+) | Length | 97 a.a. |
| NCBI ID | WP_011921722.1 | Uniprot ID | - |
| Organism | Streptococcus suis strain SZ1908 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 117164..127457
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K8227_RS00745 (K8227_00745) | - | 118193..118558 (+) | 366 | WP_002936568.1 | DUF1033 family protein | - |
| K8227_RS00750 (K8227_00750) | - | 118593..119536 (-) | 944 | Protein_115 | S66 peptidase family protein | - |
| K8227_RS00755 (K8227_00755) | comYA | 119622..120572 (+) | 951 | WP_011921718.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| K8227_RS00760 (K8227_00760) | comYB | 120484..121521 (+) | 1038 | WP_011921719.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| K8227_RS00765 (K8227_00765) | comYC | 121523..121804 (+) | 282 | WP_011921720.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| K8227_RS00770 (K8227_00770) | comGD | 121785..122192 (+) | 408 | WP_011921721.1 | competence type IV pilus minor pilin ComGD | - |
| K8227_RS00775 (K8227_00775) | comYE | 122164..122457 (+) | 294 | WP_011921722.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| K8227_RS00780 (K8227_00780) | comGF/cglF | 122444..122878 (+) | 435 | WP_011922561.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| K8227_RS00785 (K8227_00785) | comGG | 122856..123266 (+) | 411 | WP_011921724.1 | competence type IV pilus minor pilin ComGG | - |
| K8227_RS00790 (K8227_00790) | comYH | 123323..124276 (+) | 954 | WP_011922562.1 | class I SAM-dependent methyltransferase | Machinery gene |
| K8227_RS00795 (K8227_00795) | - | 124326..125513 (+) | 1188 | WP_012775422.1 | acetate kinase | - |
| K8227_RS00800 (K8227_00800) | - | 125828..126379 (+) | 552 | WP_012774908.1 | folate family ECF transporter S component | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 10817.70 Da Isoelectric Point: 9.8348
>NTDB_id=603818 K8227_RS00775 WP_011921722.1 122164..122457(+) (comYE) [Streptococcus suis strain SZ1908]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQVWELEQQEVFNLAQMAVQTKQDDLALNGVAVQVQRTAE
RVAVFHEGKEVLSVVKK
Nucleotide
Download Length: 294 bp
>NTDB_id=603818 K8227_RS00775 WP_011921722.1 122164..122457(+) (comYE) [Streptococcus suis strain SZ1908]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACCAT
TTGCAGCTTGATTTTATCAGCTGTGGATGCAGGTCGTAGGCGACAGGTTTGGGAATTGGAACAACAGGAGGTTTTCAACT
TAGCACAGATGGCTGTCCAGACAAAACAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGAACTGCGGAA
AGAGTTGCGGTTTTCCATGAAGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYE | Streptococcus mutans UA140 |
51.546 |
100 |
0.515 |
| comYE | Streptococcus mutans UA159 |
51.546 |
100 |
0.515 |
| comGE/cglE | Streptococcus pneumoniae Rx1 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae D39 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae R6 |
38.043 |
94.845 |
0.361 |
| comGE/cglE | Streptococcus pneumoniae TIGR4 |
38.043 |
94.845 |
0.361 |