Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   NI383_RS23240 Genome accession   NZ_CP099955
Coordinates   3240395..3242230 (-) Length   611 a.a.
NCBI ID   WP_005458577.1    Uniprot ID   Q87KH0
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3235395..3247230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS23215 (NI383_23370) trxA 3235658..3235984 (-) 327 WP_005458583.1 thioredoxin TrxA -
  NI383_RS23220 (NI383_23375) rhlB 3236096..3237408 (+) 1313 Protein_2861 ATP-dependent RNA helicase RhlB -
  NI383_RS23225 (NI383_23380) gppA 3237428..3238921 (+) 1494 WP_005480964.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  NI383_RS23230 (NI383_23385) - 3239118..3239786 (-) 669 WP_315868356.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  NI383_RS23235 (NI383_23390) - 3240080..3240385 (-) 306 WP_005458579.1 DUF3630 family protein -
  NI383_RS23240 (NI383_23395) recQ 3240395..3242230 (-) 1836 WP_005458577.1 ATP-dependent DNA helicase RecQ Machinery gene
  NI383_RS23245 (NI383_23400) rarD 3242405..3243319 (+) 915 WP_005497386.1 EamA family transporter RarD -
  NI383_RS23250 (NI383_23405) - 3243394..3244191 (+) 798 WP_023650110.1 AraC family transcriptional regulator -
  NI383_RS23255 (NI383_23410) - 3244283..3244942 (+) 660 WP_005497384.1 LysE family translocator -
  NI383_RS23260 (NI383_23415) ggt 3245053..3246813 (+) 1761 WP_140259230.1 gamma-glutamyltransferase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69227.13 Da        Isoelectric Point: 6.8897

>NTDB_id=603816 NI383_RS23240 WP_005458577.1 3240395..3242230(-) (recQ) [Vibrio parahaemolyticus strain Isc4A]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=603816 NI383_RS23240 WP_005458577.1 3240395..3242230(-) (recQ) [Vibrio parahaemolyticus strain Isc4A]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAAGCCAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTACCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGGCACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGCTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCATAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGCATCAACAAGCCCAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGCCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCAGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGTGTTAACCAAAGCTTTGGTATGACCTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGACTGTTGTTTCAAAACATCACCCGAAACTCGACGTTGCAATTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAACTCGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCTGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCAACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87KH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393