Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   NI383_RS22825 Genome accession   NZ_CP099955
Coordinates   3157525..3158760 (-) Length   411 a.a.
NCBI ID   WP_315868350.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3152525..3163760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS22795 (NI383_22950) - 3152710..3153120 (+) 411 WP_005460376.1 flagellar basal body-associated protein FliL -
  NI383_RS22800 (NI383_22955) glpG 3153180..3154022 (-) 843 WP_025636706.1 rhomboid family intramembrane serine protease GlpG -
  NI383_RS22805 (NI383_22960) glpE 3154022..3154342 (-) 321 WP_315868349.1 thiosulfate sulfurtransferase GlpE -
  NI383_RS22810 (NI383_22965) rpoH 3154834..3155694 (-) 861 WP_005490420.1 RNA polymerase sigma factor RpoH -
  NI383_RS22815 (NI383_22970) ftsX 3155870..3156838 (-) 969 WP_024699859.1 permease-like cell division protein FtsX -
  NI383_RS22820 (NI383_22975) ftsE 3156828..3157502 (-) 675 WP_005481953.1 cell division ATP-binding protein FtsE -
  NI383_RS22825 (NI383_22980) pilA 3157525..3158760 (-) 1236 WP_315868350.1 signal recognition particle-docking protein FtsY Machinery gene
  NI383_RS22830 (NI383_22985) rsmD 3158984..3159583 (+) 600 WP_025536965.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NI383_RS22835 (NI383_22990) - 3159609..3159875 (+) 267 WP_005496405.1 DUF1145 domain-containing protein -
  NI383_RS22840 (NI383_22995) - 3159929..3160513 (-) 585 WP_005455144.1 YhgN family NAAT transporter -
  NI383_RS22845 (NI383_23000) - 3160633..3160854 (-) 222 WP_015297472.1 YecH family metal-binding protein -
  NI383_RS22850 (NI383_23005) - 3160924..3161544 (-) 621 WP_005481960.1 lysoplasmalogenase -
  NI383_RS22855 (NI383_23010) - 3162279..3162458 (+) 180 WP_033905002.1 hypothetical protein -
  NI383_RS22860 (NI383_23015) - 3162522..3162890 (-) 369 WP_005489749.1 hypothetical protein -
  NI383_RS22865 (NI383_23020) - 3163132..3163461 (+) 330 WP_023583986.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44766.48 Da        Isoelectric Point: 4.3076

>NTDB_id=603811 NI383_RS22825 WP_315868350.1 3157525..3158760(-) (pilA) [Vibrio parahaemolyticus strain Isc4A]
MTEKKKRGLLSWLGFGDEEQSPKPKTEETVKEEAVEAPSEELQTEEVAEQAQQTQELEQEPEKAKAAPAEAEAEAEAEAE
AEAEAEAEEPQVPVAPRIQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMDTTTK
IINNLTEKASRGDLKDGEALYGLLKEEMAEILSKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQSQGKKVML
AAGDTFRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKK
IDDSAPHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFSIPIRYIGVGEGIEDLRPFETQ
EFIDALFSREE

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=603811 NI383_RS22825 WP_315868350.1 3157525..3158760(-) (pilA) [Vibrio parahaemolyticus strain Isc4A]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGACGAAGAACAAAGTCCAAAACCAAAAACTGA
AGAAACAGTAAAAGAAGAAGCAGTGGAAGCGCCTTCTGAAGAGCTGCAAACCGAAGAGGTTGCTGAGCAAGCGCAACAAA
CTCAAGAGCTTGAACAAGAGCCAGAAAAAGCTAAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAA
GCAGAAGCAGAAGCAGAAGCAGAAGAGCCACAAGTACCGGTTGCGCCTCGTATTCAAGAGCAAGAAAAGCCGACAGAAAG
CTTCTTCGCTCGCCTTAAACGCAGCCTTAGCCGTACGAAAGCGAACATCGGTGCTGGTTTCTTTGGTCTGTTCAGCGGTA
AAAAAATCGATGACGACCTATTTGAAGAGCTAGAAGAGCAACTGCTCATTGCCGATGTGGGCATGGACACCACCACAAAA
ATCATCAACAACCTGACAGAAAAAGCCTCTCGAGGTGATCTGAAAGATGGCGAAGCCCTTTATGGTCTGCTGAAAGAAGA
AATGGCGGAGATTCTATCTAAAGTAGAACAGCCTCTAGAGATCGACAGCAGCAAAACACCTTACGTCATCTTGATGGTTG
GTGTGAATGGTGTGGGTAAAACCACCACCATCGGTAAACTTGCGAAGCAGTTCCAAAGCCAAGGCAAGAAAGTGATGTTA
GCGGCAGGCGATACTTTCCGAGCGGCTGCAGTTGAGCAGCTGCAAGTGTGGGGCGAGCGTAACAATGTTCCTGTGATCGC
GCAGCATACTGGCGCAGACAGCGCATCGGTTATCTACGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTGGTTA
TCGCCGATACGGCGGGTCGTCTACAAAACAAAGCCAACCTAATGGAAGAGCTACGCAAGATTGTACGTGTGATGAAGAAA
ATTGATGATTCTGCACCACATGAAATCATGCTGACGCTGGATGCGGGTACTGGCCAAAATGCGATTAGCCAAGCGAAACT
TTTCAGTGATGTAGCTCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAGGGCGGCGTTATTTTCGCTA
TCGCTGATCAGTTTAGTATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATTGAAGACTTGCGTCCTTTTGAAACTCAA
GAGTTTATCGACGCTTTGTTTAGCCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(127-188)

SRP54-type protein, GTPase domain (SRP54)

(208-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.938

94.404

0.453