Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NI383_RS20880 Genome accession   NZ_CP099955
Coordinates   2756387..2758381 (-) Length   664 a.a.
NCBI ID   WP_315868313.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Isc4A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2751387..2763381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NI383_RS20865 (NI383_21020) epd 2752153..2753190 (-) 1038 WP_005461726.1 erythrose-4-phosphate dehydrogenase -
  NI383_RS20870 (NI383_21025) - 2753321..2755279 (-) 1959 WP_315868312.1 ligand-gated channel protein -
  NI383_RS20875 (NI383_21030) - 2755416..2756309 (+) 894 WP_005493888.1 LysR family transcriptional regulator -
  NI383_RS20880 (NI383_21035) recP/tkt 2756387..2758381 (-) 1995 WP_315868313.1 transketolase Machinery gene
  NI383_RS20885 (NI383_21040) metK 2758698..2759852 (+) 1155 WP_005461723.1 methionine adenosyltransferase -
  NI383_RS20890 (NI383_21045) - 2760197..2760994 (+) 798 WP_005461722.1 DUF2189 domain-containing protein -
  NI383_RS20895 (NI383_21050) - 2761061..2761558 (+) 498 WP_020835372.1 SprT family zinc-dependent metalloprotease -
  NI383_RS20900 (NI383_21055) endA 2761678..2762373 (+) 696 WP_128414061.1 deoxyribonuclease I -
  NI383_RS20905 (NI383_21060) rsmE 2762498..2763229 (+) 732 WP_021454379.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 71864.95 Da        Isoelectric Point: 4.7973

>NTDB_id=603794 NI383_RS20880 WP_315868313.1 2756387..2758381(-) (recP/tkt) [Vibrio parahaemolyticus strain Isc4A]
MSSRKHLANAIRALSMDGVQQANSGHPGAPMGMADIAEVLWRSHLNHNPANPEWADRDRFVLSNGHGSMLIYSLLHLSGY
ELSIDDLKNFRQLHSKTPGHPEYGYAPGIETTTGPLGQGITNAVGMALAEKALAAQFNKEGHDIIDHFTYVFMGDGCLME
GISHEACSLAGTLGLGKLIAFWDDNGISIDGHVEGWFSDDTPKRFEAYGWHVIPSVDGHDSEAINAAIEAAKADPRPTLI
CTKTIIGFGSPNKSGSHDCHGAPLGAEEIAAAREFLGWEHPAFEIPADVYAEWDAKAAGAEKEAAWNAKFEAYAAAYPTE
AAELKRRLNGELPAEWEEKASQIIADLQANPANIASRKASQNALEAFGALLPEFMGGSADLAPSNLTMWSGSKSLEANDF
SGNYIHYGVREFGMTAIMNGIALHGGFVPYGATFLMFMEYARNAMRMAALMKIQNIQVYTHDSIGLGEDGPTHQPVEQIA
SLRLTPNMNTWRPCDQVESAVAWKLAIERKDAPTALIFSRQNLAQQPRSAEQVADIAKGGYILKDSDGKPELILIATGSE
VELAVKAAEQLTAEGKKVRVVSMPSTDAFDKQDAAYREAVLPSDVTARIAIEAGIADFWYKYVGFDGRIIGMTTFGESAP
ADQLFEMFGFTVENVVNTAKELLA

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=603794 NI383_RS20880 WP_315868313.1 2756387..2758381(-) (recP/tkt) [Vibrio parahaemolyticus strain Isc4A]
ATGTCGTCTCGTAAACATCTTGCCAATGCAATTCGTGCTCTAAGCATGGATGGTGTTCAACAAGCTAACTCTGGCCACCC
AGGCGCACCTATGGGTATGGCTGATATCGCTGAAGTTCTTTGGCGCTCTCACCTAAACCACAACCCAGCTAACCCAGAGT
GGGCAGATCGCGACCGTTTTGTACTTTCAAACGGCCACGGTTCTATGCTGATCTACTCTCTACTGCACTTGAGCGGTTAC
GAGCTATCTATCGATGATCTGAAAAACTTCCGTCAGCTTCACTCTAAGACTCCAGGTCACCCAGAGTACGGCTACGCACC
AGGCATCGAAACGACAACAGGTCCTCTAGGTCAAGGTATCACGAACGCTGTTGGTATGGCTCTAGCAGAAAAAGCGCTAG
CAGCACAATTCAACAAAGAAGGCCACGACATCATTGACCATTTCACTTACGTGTTCATGGGGGATGGCTGTCTGATGGAA
GGTATCTCGCATGAGGCATGTTCTCTTGCTGGTACTCTAGGCCTAGGTAAACTGATCGCATTTTGGGATGACAACGGCAT
CTCTATCGATGGTCACGTTGAAGGTTGGTTCTCTGACGATACACCTAAGCGTTTCGAAGCTTACGGTTGGCACGTAATCC
CATCAGTGGATGGCCACGATTCTGAAGCAATCAACGCAGCGATTGAAGCTGCAAAAGCAGACCCTCGTCCTACGCTAATT
TGTACGAAGACTATCATCGGTTTTGGTTCTCCAAACAAATCGGGTTCTCACGACTGTCACGGTGCACCACTAGGCGCTGA
AGAAATCGCAGCAGCACGTGAATTCCTAGGTTGGGAACACCCTGCATTTGAAATCCCTGCTGATGTATACGCAGAGTGGG
ATGCAAAAGCAGCTGGCGCTGAAAAAGAAGCAGCGTGGAACGCGAAGTTCGAAGCATACGCAGCGGCTTACCCAACAGAA
GCAGCAGAGCTTAAGCGTCGTCTAAATGGCGAACTTCCTGCTGAGTGGGAAGAGAAAGCAAGCCAAATCATTGCGGATCT
TCAAGCAAACCCAGCAAACATTGCGTCACGTAAAGCATCTCAAAACGCTCTAGAGGCATTTGGTGCTCTACTACCTGAGT
TCATGGGCGGCTCTGCTGACCTAGCGCCTTCTAACCTAACCATGTGGTCTGGTTCTAAGTCTCTAGAAGCGAACGACTTC
TCTGGTAACTACATCCACTACGGTGTACGTGAATTTGGTATGACTGCTATCATGAACGGTATCGCACTACACGGCGGTTT
CGTTCCTTACGGCGCAACATTCCTAATGTTCATGGAATACGCTCGCAACGCAATGCGTATGGCCGCTCTGATGAAAATTC
AGAACATCCAAGTGTACACTCACGACTCTATCGGTCTTGGCGAAGATGGCCCAACTCACCAACCAGTTGAACAAATCGCG
TCTCTACGTTTGACTCCAAACATGAACACATGGCGTCCATGTGACCAAGTTGAGTCTGCTGTAGCATGGAAACTAGCGAT
TGAACGTAAAGATGCACCAACAGCACTTATCTTCTCTCGTCAAAACCTAGCGCAACAACCACGTAGCGCTGAGCAAGTTG
CAGACATCGCGAAAGGTGGCTACATCCTGAAAGACAGCGATGGCAAACCTGAGCTAATCCTAATCGCAACAGGTTCTGAA
GTTGAGCTAGCAGTGAAAGCCGCTGAGCAACTAACCGCAGAAGGTAAGAAAGTACGCGTTGTTTCAATGCCATCAACAGA
TGCATTCGACAAACAAGACGCAGCTTACCGTGAAGCAGTTCTACCATCAGACGTAACAGCACGTATCGCTATTGAAGCGG
GCATCGCAGACTTCTGGTACAAGTACGTTGGTTTCGACGGTCGCATCATCGGTATGACAACATTCGGTGAATCTGCACCT
GCTGACCAGTTGTTCGAAATGTTTGGTTTCACTGTAGAAAACGTAGTGAACACAGCAAAAGAACTACTAGCGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(541-655)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-524)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.554

98.946

0.48