Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   K8L98_RS22940 Genome accession   NZ_CP082944
Coordinates   4627622..4628572 (-) Length   316 a.a.
NCBI ID   WP_223438378.1    Uniprot ID   -
Organism   Metabacillus dongyingensis strain BY2G20     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4622622..4633572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8L98_RS22920 (K8L98_22895) - 4623338..4624543 (-) 1206 WP_275976725.1 amidohydrolase -
  K8L98_RS22925 (K8L98_22900) - 4624960..4625907 (-) 948 WP_223438375.1 siderophore ABC transporter substrate-binding protein -
  K8L98_RS22930 (K8L98_22905) - 4625930..4626685 (-) 756 WP_223438376.1 ABC transporter ATP-binding protein -
  K8L98_RS22935 (K8L98_22910) - 4626679..4627629 (-) 951 WP_223438377.1 iron chelate uptake ABC transporter family permease subunit -
  K8L98_RS22940 (K8L98_22915) ceuB 4627622..4628572 (-) 951 WP_223438378.1 ABC transporter permease Machinery gene
  K8L98_RS22945 (K8L98_22920) - 4628775..4629206 (-) 432 WP_223438384.1 MarR family winged helix-turn-helix transcriptional regulator -
  K8L98_RS22950 (K8L98_22925) - 4629453..4629866 (-) 414 WP_223438385.1 VOC family protein -
  K8L98_RS22955 (K8L98_22930) cyoE 4630101..4631015 (+) 915 WP_223438387.1 heme o synthase -
  K8L98_RS22960 (K8L98_22935) - 4631178..4631498 (-) 321 WP_223438389.1 ribonuclease E inhibitor RraB -
  K8L98_RS22965 (K8L98_22940) - 4631656..4631814 (+) 159 WP_223438391.1 hypothetical protein -
  K8L98_RS22970 (K8L98_22945) - 4631852..4632580 (-) 729 WP_223438393.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34961.18 Da        Isoelectric Point: 9.7025

>NTDB_id=603767 K8L98_RS22940 WP_223438378.1 4627622..4628572(-) (ceuB) [Metabacillus dongyingensis strain BY2G20]
MKKRYLFLALIILSISSIFIGVKDITPLDLLNLQDDQVQILLISRLPRLISILIAGVSMSICGLIMQQLTRNKFVSPTTA
GTMDSARLGILVSLMIFTSASPLEKMGVAFVFALAGTFIFMKILERIRFKDTIFIPLVGLMFGNIIGSITTFFAYKNDLI
QNMSSWLQGDFSMIVKGQYELIYISIPLVIVAYFFANRFTVAGMGEEFSANLGLNYKQVVNIGLVIVALVTTVVILTAGV
IPFLGLIIPNIVSIYLGDNLKKSLPHTALLGAVFILFCDILGRIIIYPYEISIGLTVGVIGSIIFIYLLFRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=603767 K8L98_RS22940 WP_223438378.1 4627622..4628572(-) (ceuB) [Metabacillus dongyingensis strain BY2G20]
ATGAAAAAGAGATATTTGTTTTTAGCGCTAATAATTTTATCAATTTCCTCCATTTTCATCGGGGTCAAGGACATTACCCC
TCTAGATCTTCTGAATCTGCAGGATGATCAGGTGCAAATCCTCCTGATAAGCAGACTGCCGCGGCTCATCAGCATTTTGA
TTGCCGGTGTTAGTATGAGCATCTGCGGCTTAATCATGCAGCAGTTAACGAGGAACAAATTTGTCTCTCCGACCACAGCA
GGTACTATGGACTCTGCTAGATTGGGCATTTTAGTTTCGCTGATGATATTCACTTCGGCAAGTCCGCTTGAAAAGATGGG
TGTTGCCTTCGTTTTTGCACTAGCCGGTACGTTCATTTTTATGAAGATTTTAGAGAGAATCAGATTTAAAGATACGATCT
TCATTCCGCTTGTAGGTTTAATGTTCGGCAACATCATTGGTTCCATTACAACCTTTTTCGCCTACAAAAATGATTTGATT
CAAAACATGTCATCTTGGCTTCAGGGCGATTTTTCTATGATTGTAAAAGGGCAGTATGAGCTGATCTACATAAGCATTCC
TCTTGTTATTGTTGCGTATTTCTTTGCGAATCGATTTACGGTAGCGGGAATGGGAGAAGAGTTTTCAGCCAATCTGGGAC
TGAATTATAAGCAGGTTGTCAATATAGGTCTTGTGATTGTAGCTCTTGTGACAACGGTCGTTATTTTGACCGCAGGCGTC
ATTCCTTTCCTCGGATTAATCATTCCGAACATCGTCAGCATTTATTTAGGGGACAATCTGAAGAAAAGCCTGCCGCATAC
AGCTTTGCTTGGTGCAGTATTTATCCTGTTCTGTGATATTTTAGGGCGTATCATCATTTATCCGTATGAAATATCGATTG
GTTTGACTGTCGGTGTGATCGGAAGCATCATTTTCATTTATTTACTGTTTAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56.667

94.937

0.538